Experiment: m.b. Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c31660 and PGA1_c31670 are separated by 223 nucleotides PGA1_c31670 and PGA1_c31680 are separated by 127 nucleotides
PGA1_c31660: PGA1_c31660 - transporter, MFS family, at 3,306,121 to 3,307,362
_c31660
PGA1_c31670: PGA1_c31670 - AFG1-like ATPase, at 3,307,586 to 3,308,656
_c31670
PGA1_c31680: PGA1_c31680 - putative bifunctional enzyme FolC, at 3,308,784 to 3,310,052
_c31680
Position (kb)
3307
3308
3309 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3306.586 kb on + strand, within PGA1_c31660 at 3306.647 kb on + strand, within PGA1_c31660 at 3306.756 kb on - strand, within PGA1_c31660 at 3306.766 kb on - strand, within PGA1_c31660 at 3306.821 kb on + strand, within PGA1_c31660 at 3306.919 kb on - strand, within PGA1_c31660 at 3307.002 kb on + strand, within PGA1_c31660 at 3307.010 kb on - strand, within PGA1_c31660 at 3307.017 kb on - strand, within PGA1_c31660 at 3307.017 kb on - strand, within PGA1_c31660 at 3307.023 kb on - strand, within PGA1_c31660 at 3307.096 kb on - strand, within PGA1_c31660 at 3307.106 kb on + strand, within PGA1_c31660 at 3307.111 kb on + strand, within PGA1_c31660 at 3307.111 kb on + strand, within PGA1_c31660 at 3307.119 kb on - strand, within PGA1_c31660 at 3307.119 kb on - strand, within PGA1_c31660 at 3307.119 kb on - strand, within PGA1_c31660 at 3307.129 kb on - strand, within PGA1_c31660 at 3307.129 kb on - strand, within PGA1_c31660 at 3307.129 kb on - strand, within PGA1_c31660 at 3307.129 kb on - strand, within PGA1_c31660 at 3307.195 kb on - strand, within PGA1_c31660 at 3307.205 kb on - strand, within PGA1_c31660 at 3307.241 kb on - strand at 3307.272 kb on + strand at 3307.272 kb on + strand at 3307.290 kb on + strand at 3307.290 kb on + strand at 3307.290 kb on + strand at 3307.298 kb on - strand at 3307.298 kb on - strand at 3307.298 kb on - strand at 3307.334 kb on + strand at 3307.337 kb on - strand at 3307.355 kb on - strand at 3307.360 kb on - strand at 3307.365 kb on - strand at 3307.365 kb on - strand at 3307.365 kb on - strand at 3307.365 kb on - strand at 3307.365 kb on - strand at 3307.395 kb on + strand at 3307.403 kb on - strand at 3307.419 kb on - strand at 3307.465 kb on + strand at 3307.479 kb on - strand at 3307.491 kb on + strand at 3307.499 kb on - strand at 3307.499 kb on - strand at 3307.524 kb on + strand at 3307.524 kb on + strand at 3307.524 kb on + strand at 3307.557 kb on - strand at 3307.569 kb on + strand at 3307.569 kb on + strand at 3307.569 kb on + strand at 3307.569 kb on + strand at 3307.569 kb on + strand at 3307.569 kb on + strand at 3307.569 kb on + strand at 3307.569 kb on + strand at 3307.577 kb on - strand at 3307.577 kb on - strand at 3307.577 kb on - strand at 3307.747 kb on + strand, within PGA1_c31670 at 3307.771 kb on - strand, within PGA1_c31670 at 3307.905 kb on + strand, within PGA1_c31670 at 3307.913 kb on - strand, within PGA1_c31670 at 3308.086 kb on + strand, within PGA1_c31670 at 3308.217 kb on - strand, within PGA1_c31670 at 3308.448 kb on + strand, within PGA1_c31670 at 3308.512 kb on + strand, within PGA1_c31670 at 3308.525 kb on - strand, within PGA1_c31670 at 3308.570 kb on + strand at 3308.615 kb on - strand at 3308.635 kb on + strand at 3308.635 kb on + strand at 3308.643 kb on - strand at 3308.643 kb on - strand at 3308.645 kb on + strand at 3308.650 kb on + strand at 3308.653 kb on - strand at 3308.659 kb on - strand at 3308.719 kb on + strand at 3308.775 kb on + strand at 3308.801 kb on + strand at 3308.809 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.002 mg/ml remove 3,306,586 + PGA1_c31660 0.37 -0.2 3,306,647 + PGA1_c31660 0.42 -0.6 3,306,756 - PGA1_c31660 0.51 -0.5 3,306,766 - PGA1_c31660 0.52 -0.8 3,306,821 + PGA1_c31660 0.56 -0.2 3,306,919 - PGA1_c31660 0.64 -2.2 3,307,002 + PGA1_c31660 0.71 -0.2 3,307,010 - PGA1_c31660 0.72 +0.7 3,307,017 - PGA1_c31660 0.72 +1.2 3,307,017 - PGA1_c31660 0.72 -0.1 3,307,023 - PGA1_c31660 0.73 -0.4 3,307,096 - PGA1_c31660 0.79 +1.0 3,307,106 + PGA1_c31660 0.79 +0.0 3,307,111 + PGA1_c31660 0.80 +2.1 3,307,111 + PGA1_c31660 0.80 -1.4 3,307,119 - PGA1_c31660 0.80 -1.0 3,307,119 - PGA1_c31660 0.80 +1.0 3,307,119 - PGA1_c31660 0.80 +0.7 3,307,129 - PGA1_c31660 0.81 +0.1 3,307,129 - PGA1_c31660 0.81 -3.2 3,307,129 - PGA1_c31660 0.81 -0.0 3,307,129 - PGA1_c31660 0.81 -1.5 3,307,195 - PGA1_c31660 0.86 -0.5 3,307,205 - PGA1_c31660 0.87 +1.7 3,307,241 - +0.3 3,307,272 + -0.3 3,307,272 + -0.3 3,307,290 + +0.3 3,307,290 + -1.5 3,307,290 + -1.8 3,307,298 - +0.3 3,307,298 - +0.5 3,307,298 - +0.5 3,307,334 + +1.1 3,307,337 - +2.1 3,307,355 - +0.6 3,307,360 - -1.2 3,307,365 - +0.5 3,307,365 - +0.2 3,307,365 - +0.4 3,307,365 - -0.8 3,307,365 - +0.4 3,307,395 + +0.5 3,307,403 - +0.6 3,307,419 - -1.2 3,307,465 + +0.6 3,307,479 - -0.2 3,307,491 + +0.3 3,307,499 - +1.0 3,307,499 - +0.6 3,307,524 + +1.9 3,307,524 + -1.7 3,307,524 + -1.2 3,307,557 - -1.3 3,307,569 + +0.7 3,307,569 + -2.4 3,307,569 + -0.3 3,307,569 + -0.1 3,307,569 + -2.1 3,307,569 + -0.7 3,307,569 + +0.8 3,307,569 + +1.4 3,307,577 - -0.9 3,307,577 - -1.9 3,307,577 - +1.1 3,307,747 + PGA1_c31670 0.15 +0.2 3,307,771 - PGA1_c31670 0.17 +0.9 3,307,905 + PGA1_c31670 0.30 +1.0 3,307,913 - PGA1_c31670 0.31 -0.7 3,308,086 + PGA1_c31670 0.47 +1.1 3,308,217 - PGA1_c31670 0.59 +2.8 3,308,448 + PGA1_c31670 0.80 +1.6 3,308,512 + PGA1_c31670 0.86 +1.4 3,308,525 - PGA1_c31670 0.88 +3.4 3,308,570 + +2.5 3,308,615 - +1.4 3,308,635 + -0.2 3,308,635 + -1.7 3,308,643 - +0.8 3,308,643 - +1.0 3,308,645 + +0.2 3,308,650 + +0.6 3,308,653 - +0.4 3,308,659 - +1.4 3,308,719 + +0.8 3,308,775 + +0.2 3,308,801 + +0.0 3,308,809 - -0.9
Or see this region's nucleotide sequence