Experiment: m.b. Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c02930 and PGA1_c02940 are separated by 77 nucleotides PGA1_c02940 and PGA1_c02950 are separated by 11 nucleotides PGA1_c02950 and PGA1_c02960 overlap by 4 nucleotides
PGA1_c02930: PGA1_c02930 - OmpA domain-containing protein, at 281,531 to 283,441
_c02930
PGA1_c02940: PGA1_c02940 - 4-hydroxybenzoate octaprenyltransferase UbiA, at 283,519 to 284,481
_c02940
PGA1_c02950: PGA1_c02950 - RNA methyltransferase-like protein, at 284,493 to 285,221
_c02950
PGA1_c02960: PGA1_c02960 - Predicted acetyltransferase, at 285,218 to 286,126
_c02960
Position (kb) 283
284
285 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 282.536 kb on - strand, within PGA1_c02930 at 282.538 kb on + strand, within PGA1_c02930 at 282.596 kb on + strand, within PGA1_c02930 at 282.600 kb on + strand, within PGA1_c02930 at 282.744 kb on - strand, within PGA1_c02930 at 282.794 kb on - strand, within PGA1_c02930 at 282.856 kb on + strand, within PGA1_c02930 at 282.872 kb on - strand, within PGA1_c02930 at 282.966 kb on - strand, within PGA1_c02930 at 282.979 kb on - strand, within PGA1_c02930 at 283.227 kb on + strand, within PGA1_c02930 at 283.237 kb on + strand, within PGA1_c02930 at 283.243 kb on + strand, within PGA1_c02930 at 283.285 kb on + strand at 283.293 kb on - strand at 283.305 kb on + strand at 283.383 kb on - strand at 283.456 kb on + strand at 283.456 kb on + strand at 283.456 kb on + strand at 283.456 kb on + strand at 283.464 kb on - strand at 283.464 kb on - strand at 283.488 kb on - strand at 283.490 kb on + strand at 284.528 kb on + strand at 284.538 kb on + strand at 284.550 kb on + strand at 284.558 kb on - strand at 284.601 kb on + strand, within PGA1_c02950 at 284.621 kb on + strand, within PGA1_c02950 at 284.633 kb on + strand, within PGA1_c02950 at 284.639 kb on - strand, within PGA1_c02950 at 284.647 kb on + strand, within PGA1_c02950 at 284.672 kb on + strand, within PGA1_c02950 at 284.677 kb on + strand, within PGA1_c02950 at 284.798 kb on - strand, within PGA1_c02950 at 284.810 kb on + strand, within PGA1_c02950 at 284.810 kb on + strand, within PGA1_c02950 at 284.865 kb on + strand, within PGA1_c02950 at 284.873 kb on - strand, within PGA1_c02950 at 284.880 kb on + strand, within PGA1_c02950 at 284.908 kb on + strand, within PGA1_c02950 at 284.913 kb on - strand, within PGA1_c02950 at 284.962 kb on + strand, within PGA1_c02950 at 284.965 kb on - strand, within PGA1_c02950 at 285.000 kb on - strand, within PGA1_c02950 at 285.008 kb on - strand, within PGA1_c02950 at 285.056 kb on - strand, within PGA1_c02950 at 285.056 kb on - strand, within PGA1_c02950 at 285.124 kb on - strand, within PGA1_c02950 at 285.130 kb on - strand, within PGA1_c02950 at 285.136 kb on + strand, within PGA1_c02950 at 285.136 kb on + strand, within PGA1_c02950 at 285.136 kb on + strand, within PGA1_c02950 at 285.144 kb on - strand, within PGA1_c02950 at 285.144 kb on - strand, within PGA1_c02950 at 285.144 kb on - strand, within PGA1_c02950 at 285.171 kb on + strand at 285.331 kb on - strand, within PGA1_c02960 at 285.341 kb on - strand, within PGA1_c02960 at 285.392 kb on + strand, within PGA1_c02960 at 285.433 kb on + strand, within PGA1_c02960
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.002 mg/ml remove 282,536 - PGA1_c02930 0.53 -2.5 282,538 + PGA1_c02930 0.53 +0.1 282,596 + PGA1_c02930 0.56 -1.7 282,600 + PGA1_c02930 0.56 -2.1 282,744 - PGA1_c02930 0.63 -2.4 282,794 - PGA1_c02930 0.66 -2.4 282,856 + PGA1_c02930 0.69 -1.9 282,872 - PGA1_c02930 0.70 -2.7 282,966 - PGA1_c02930 0.75 -1.2 282,979 - PGA1_c02930 0.76 -1.7 283,227 + PGA1_c02930 0.89 -0.5 283,237 + PGA1_c02930 0.89 -0.9 283,243 + PGA1_c02930 0.90 -0.8 283,285 + -1.5 283,293 - -1.1 283,305 + -2.7 283,383 - -1.2 283,456 + -1.5 283,456 + -1.9 283,456 + -1.7 283,456 + -3.3 283,464 - -2.1 283,464 - -3.2 283,488 - +0.1 283,490 + -2.2 284,528 + +1.3 284,538 + +0.9 284,550 + +1.3 284,558 - +1.6 284,601 + PGA1_c02950 0.15 +1.4 284,621 + PGA1_c02950 0.18 -1.5 284,633 + PGA1_c02950 0.19 +1.4 284,639 - PGA1_c02950 0.20 +1.0 284,647 + PGA1_c02950 0.21 +2.7 284,672 + PGA1_c02950 0.25 +1.3 284,677 + PGA1_c02950 0.25 +2.3 284,798 - PGA1_c02950 0.42 -1.2 284,810 + PGA1_c02950 0.43 +1.2 284,810 + PGA1_c02950 0.43 -1.5 284,865 + PGA1_c02950 0.51 +0.7 284,873 - PGA1_c02950 0.52 -0.5 284,880 + PGA1_c02950 0.53 -0.1 284,908 + PGA1_c02950 0.57 +0.1 284,913 - PGA1_c02950 0.58 +1.2 284,962 + PGA1_c02950 0.64 +0.7 284,965 - PGA1_c02950 0.65 +0.6 285,000 - PGA1_c02950 0.70 +0.2 285,008 - PGA1_c02950 0.71 +1.6 285,056 - PGA1_c02950 0.77 +1.7 285,056 - PGA1_c02950 0.77 -0.3 285,124 - PGA1_c02950 0.87 -1.4 285,130 - PGA1_c02950 0.87 -1.1 285,136 + PGA1_c02950 0.88 +0.6 285,136 + PGA1_c02950 0.88 +1.3 285,136 + PGA1_c02950 0.88 +0.8 285,144 - PGA1_c02950 0.89 +0.5 285,144 - PGA1_c02950 0.89 +1.3 285,144 - PGA1_c02950 0.89 +0.4 285,171 + +0.8 285,331 - PGA1_c02960 0.12 -0.9 285,341 - PGA1_c02960 0.14 +0.9 285,392 + PGA1_c02960 0.19 -0.1 285,433 + PGA1_c02960 0.24 -0.8
Or see this region's nucleotide sequence