Experiment: m.b. Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c02890 and PGA1_c02900 overlap by 1 nucleotides PGA1_c02900 and PGA1_c02910 are separated by 3 nucleotides PGA1_c02910 and PGA1_c02920 are separated by 15 nucleotides PGA1_c02920 and PGA1_c02930 overlap by 4 nucleotides
PGA1_c02890: PGA1_c02890 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase PgsA, at 279,823 to 280,494
_c02890
PGA1_c02900: PGA1_c02900 - putative molybdopterin-converting factor subunit 1, at 280,494 to 280,739
_c02900
PGA1_c02910: PGA1_c02910 - molybdopterin-converting factor subunit 2, at 280,743 to 281,204
_c02910
PGA1_c02920: PGA1_c02920 - hypothetical protein, at 281,220 to 281,534
_c02920
PGA1_c02930: PGA1_c02930 - OmpA domain-containing protein, at 281,531 to 283,441
_c02930
Position (kb) 281
282 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 280.610 kb on + strand, within PGA1_c02900 at 280.618 kb on - strand, within PGA1_c02900 at 280.776 kb on - strand at 280.776 kb on - strand at 280.839 kb on + strand, within PGA1_c02910 at 280.847 kb on - strand, within PGA1_c02910 at 280.847 kb on - strand, within PGA1_c02910 at 280.913 kb on + strand, within PGA1_c02910 at 281.024 kb on + strand, within PGA1_c02910 at 281.056 kb on + strand, within PGA1_c02910 at 281.056 kb on + strand, within PGA1_c02910 at 281.251 kb on - strand at 281.251 kb on - strand at 281.299 kb on + strand, within PGA1_c02920 at 281.322 kb on + strand, within PGA1_c02920 at 281.340 kb on - strand, within PGA1_c02920 at 281.385 kb on + strand, within PGA1_c02920 at 281.390 kb on + strand, within PGA1_c02920 at 281.411 kb on + strand, within PGA1_c02920 at 281.522 kb on - strand at 281.524 kb on + strand at 281.527 kb on - strand at 281.536 kb on + strand at 281.548 kb on + strand at 281.566 kb on - strand at 281.725 kb on - strand, within PGA1_c02930 at 281.857 kb on + strand, within PGA1_c02930 at 281.941 kb on + strand, within PGA1_c02930 at 281.993 kb on - strand, within PGA1_c02930 at 281.993 kb on - strand, within PGA1_c02930 at 281.998 kb on - strand, within PGA1_c02930 at 282.022 kb on - strand, within PGA1_c02930 at 282.031 kb on + strand, within PGA1_c02930 at 282.052 kb on + strand, within PGA1_c02930 at 282.052 kb on + strand, within PGA1_c02930 at 282.297 kb on - strand, within PGA1_c02930 at 282.370 kb on - strand, within PGA1_c02930 at 282.370 kb on - strand, within PGA1_c02930 at 282.370 kb on - strand, within PGA1_c02930 at 282.416 kb on + strand, within PGA1_c02930 at 282.424 kb on - strand, within PGA1_c02930
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.002 mg/ml remove 280,610 + PGA1_c02900 0.47 -1.1 280,618 - PGA1_c02900 0.50 -0.8 280,776 - +1.4 280,776 - +1.5 280,839 + PGA1_c02910 0.21 +0.5 280,847 - PGA1_c02910 0.23 -2.4 280,847 - PGA1_c02910 0.23 -1.0 280,913 + PGA1_c02910 0.37 -0.3 281,024 + PGA1_c02910 0.61 -0.7 281,056 + PGA1_c02910 0.68 -2.2 281,056 + PGA1_c02910 0.68 -0.8 281,251 - +1.3 281,251 - +0.0 281,299 + PGA1_c02920 0.25 -3.6 281,322 + PGA1_c02920 0.32 +0.4 281,340 - PGA1_c02920 0.38 -2.3 281,385 + PGA1_c02920 0.52 +1.1 281,390 + PGA1_c02920 0.54 -0.6 281,411 + PGA1_c02920 0.61 -3.4 281,522 - +0.3 281,524 + -3.0 281,527 - -1.7 281,536 + -1.5 281,548 + +0.4 281,566 - +0.1 281,725 - PGA1_c02930 0.10 -2.4 281,857 + PGA1_c02930 0.17 -2.6 281,941 + PGA1_c02930 0.21 -1.5 281,993 - PGA1_c02930 0.24 -1.2 281,993 - PGA1_c02930 0.24 -0.9 281,998 - PGA1_c02930 0.24 -1.9 282,022 - PGA1_c02930 0.26 -2.4 282,031 + PGA1_c02930 0.26 +0.8 282,052 + PGA1_c02930 0.27 -2.6 282,052 + PGA1_c02930 0.27 +1.1 282,297 - PGA1_c02930 0.40 -2.2 282,370 - PGA1_c02930 0.44 +0.1 282,370 - PGA1_c02930 0.44 -3.3 282,370 - PGA1_c02930 0.44 -1.2 282,416 + PGA1_c02930 0.46 -2.6 282,424 - PGA1_c02930 0.47 -2.4
Or see this region's nucleotide sequence