Strain Fitness in Marinobacter adhaerens HP15 around HP15_2627

Experiment: m.b. Cobalt chloride 0.64 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2625 and HP15_2626 are separated by 15 nucleotidesHP15_2626 and HP15_2627 are separated by 4 nucleotidesHP15_2627 and HP15_2628 are separated by 192 nucleotides HP15_2625: HP15_2625 - silent information regulator protein Sir2, at 2,776,695 to 2,777,597 _2625 HP15_2626: HP15_2626 - conserved hypothetical protein, at 2,777,613 to 2,778,344 _2626 HP15_2627: HP15_2627 - protein containing DUF1415, at 2,778,349 to 2,778,909 _2627 HP15_2628: HP15_2628 - ABC transporter ATP-binding protein-like protein, at 2,779,102 to 2,780,688 _2628 Position (kb) 2778 2779Strain fitness (log2 ratio) -2 -1 0 1 2at 2777.359 kb on + strand, within HP15_2625at 2777.431 kb on + strand, within HP15_2625at 2777.438 kb on + strand, within HP15_2625at 2777.439 kb on - strand, within HP15_2625at 2777.446 kb on - strand, within HP15_2625at 2777.703 kb on + strand, within HP15_2626at 2777.703 kb on + strand, within HP15_2626at 2777.714 kb on - strand, within HP15_2626at 2778.106 kb on + strand, within HP15_2626at 2778.111 kb on + strand, within HP15_2626at 2778.165 kb on - strand, within HP15_2626at 2778.345 kb on - strandat 2778.347 kb on + strandat 2778.347 kb on + strandat 2778.347 kb on + strandat 2778.355 kb on - strandat 2778.355 kb on - strandat 2778.392 kb on - strandat 2778.434 kb on - strand, within HP15_2627at 2778.634 kb on + strand, within HP15_2627at 2778.756 kb on - strand, within HP15_2627at 2778.837 kb on + strand, within HP15_2627at 2778.911 kb on - strandat 2778.957 kb on + strandat 2778.960 kb on + strandat 2778.970 kb on + strandat 2779.010 kb on - strandat 2779.089 kb on - strandat 2779.184 kb on - strandat 2779.355 kb on + strand, within HP15_2628at 2779.363 kb on - strand, within HP15_2628at 2779.426 kb on + strand, within HP15_2628at 2779.441 kb on - strand, within HP15_2628at 2779.529 kb on + strand, within HP15_2628at 2779.547 kb on - strand, within HP15_2628at 2779.666 kb on - strand, within HP15_2628at 2779.801 kb on - strand, within HP15_2628at 2779.803 kb on + strand, within HP15_2628

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.64 mM
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2,777,359 + HP15_2625 0.74 +0.2
2,777,431 + HP15_2625 0.82 -1.1
2,777,438 + HP15_2625 0.82 +0.4
2,777,439 - HP15_2625 0.82 -0.7
2,777,446 - HP15_2625 0.83 -0.6
2,777,703 + HP15_2626 0.12 -0.1
2,777,703 + HP15_2626 0.12 -2.1
2,777,714 - HP15_2626 0.14 -0.3
2,778,106 + HP15_2626 0.67 +0.3
2,778,111 + HP15_2626 0.68 +0.4
2,778,165 - HP15_2626 0.75 +1.2
2,778,345 - +0.8
2,778,347 + +1.4
2,778,347 + -0.4
2,778,347 + -0.4
2,778,355 - -0.5
2,778,355 - -0.2
2,778,392 - +0.2
2,778,434 - HP15_2627 0.15 -1.8
2,778,634 + HP15_2627 0.51 -0.5
2,778,756 - HP15_2627 0.73 -2.1
2,778,837 + HP15_2627 0.87 -0.4
2,778,911 - +2.7
2,778,957 + -0.4
2,778,960 + +0.1
2,778,970 + +0.7
2,779,010 - +1.2
2,779,089 - +0.5
2,779,184 - -0.2
2,779,355 + HP15_2628 0.16 -0.8
2,779,363 - HP15_2628 0.16 -0.4
2,779,426 + HP15_2628 0.20 -0.3
2,779,441 - HP15_2628 0.21 -0.7
2,779,529 + HP15_2628 0.27 +0.7
2,779,547 - HP15_2628 0.28 -0.2
2,779,666 - HP15_2628 0.36 -0.7
2,779,801 - HP15_2628 0.44 +1.6
2,779,803 + HP15_2628 0.44 +0.3

Or see this region's nucleotide sequence