Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c02710

Experiment: m.b. Benzalkonium Chloride 0.002 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPGA1_c02700 and PGA1_c02710 are separated by 267 nucleotidesPGA1_c02710 and PGA1_c02720 are separated by 73 nucleotidesPGA1_c02720 and PGA1_c02730 are separated by 10 nucleotides PGA1_c02700: PGA1_c02700 - putative HTH-type transcriptional regulator, at 257,859 to 258,872 _c02700 PGA1_c02710: PGA1_c02710 - sn-glycerol-3-phosphate-binding periplasmic protein ugpB, at 259,140 to 260,441 _c02710 PGA1_c02720: PGA1_c02720 - sn-glycerol-3-phosphate transport system permease protein UgpA, at 260,515 to 261,396 _c02720 PGA1_c02730: PGA1_c02730 - sn-glycerol-3-phosphate transport system permease protein UgpE, at 261,407 to 262,288 _c02730 Position (kb) 259 260 261Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 258.146 kb on + strand, within PGA1_c02700at 258.216 kb on + strand, within PGA1_c02700at 258.268 kb on - strand, within PGA1_c02700at 258.271 kb on - strand, within PGA1_c02700at 258.294 kb on + strand, within PGA1_c02700at 258.294 kb on + strand, within PGA1_c02700at 258.302 kb on - strand, within PGA1_c02700at 258.345 kb on - strand, within PGA1_c02700at 258.376 kb on + strand, within PGA1_c02700at 258.376 kb on - strand, within PGA1_c02700at 258.412 kb on - strand, within PGA1_c02700at 258.421 kb on + strand, within PGA1_c02700at 258.429 kb on - strand, within PGA1_c02700at 258.431 kb on + strand, within PGA1_c02700at 258.501 kb on + strand, within PGA1_c02700at 258.509 kb on - strand, within PGA1_c02700at 258.515 kb on - strand, within PGA1_c02700at 258.533 kb on + strand, within PGA1_c02700at 258.541 kb on - strand, within PGA1_c02700at 258.562 kb on - strand, within PGA1_c02700at 258.593 kb on + strand, within PGA1_c02700at 258.600 kb on + strand, within PGA1_c02700at 258.601 kb on - strand, within PGA1_c02700at 258.609 kb on - strand, within PGA1_c02700at 258.620 kb on - strand, within PGA1_c02700at 258.653 kb on + strand, within PGA1_c02700at 258.688 kb on + strand, within PGA1_c02700at 258.718 kb on + strand, within PGA1_c02700at 258.726 kb on - strand, within PGA1_c02700at 258.733 kb on - strand, within PGA1_c02700at 258.746 kb on + strand, within PGA1_c02700at 258.764 kb on + strand, within PGA1_c02700at 258.877 kb on + strandat 258.920 kb on - strandat 258.939 kb on - strandat 258.939 kb on - strandat 258.982 kb on - strandat 259.026 kb on - strandat 259.032 kb on + strandat 259.032 kb on + strandat 259.034 kb on + strandat 259.042 kb on - strandat 259.049 kb on + strandat 259.074 kb on - strandat 259.090 kb on + strandat 259.125 kb on - strandat 259.191 kb on + strandat 259.226 kb on + strandat 259.244 kb on + strandat 259.252 kb on - strandat 259.279 kb on + strand, within PGA1_c02710at 259.324 kb on + strand, within PGA1_c02710at 259.324 kb on + strand, within PGA1_c02710at 259.376 kb on + strand, within PGA1_c02710at 259.384 kb on - strand, within PGA1_c02710at 259.421 kb on - strand, within PGA1_c02710at 259.443 kb on - strand, within PGA1_c02710at 259.496 kb on + strand, within PGA1_c02710at 259.503 kb on + strand, within PGA1_c02710at 259.551 kb on + strand, within PGA1_c02710at 259.553 kb on + strand, within PGA1_c02710at 259.553 kb on + strand, within PGA1_c02710at 259.561 kb on + strand, within PGA1_c02710at 259.561 kb on + strand, within PGA1_c02710at 259.569 kb on - strand, within PGA1_c02710at 259.569 kb on - strand, within PGA1_c02710at 259.569 kb on - strand, within PGA1_c02710at 259.617 kb on - strand, within PGA1_c02710at 259.620 kb on + strand, within PGA1_c02710at 259.645 kb on + strand, within PGA1_c02710at 259.678 kb on + strand, within PGA1_c02710at 259.693 kb on + strand, within PGA1_c02710at 259.711 kb on - strand, within PGA1_c02710at 259.767 kb on + strand, within PGA1_c02710at 259.767 kb on + strand, within PGA1_c02710at 259.767 kb on + strand, within PGA1_c02710at 259.767 kb on + strand, within PGA1_c02710at 259.809 kb on - strand, within PGA1_c02710at 259.885 kb on - strand, within PGA1_c02710at 259.885 kb on - strand, within PGA1_c02710at 259.885 kb on - strand, within PGA1_c02710at 259.927 kb on + strand, within PGA1_c02710at 259.998 kb on - strand, within PGA1_c02710at 260.005 kb on + strand, within PGA1_c02710at 260.008 kb on + strand, within PGA1_c02710at 260.016 kb on - strand, within PGA1_c02710at 260.016 kb on - strand, within PGA1_c02710at 260.128 kb on + strand, within PGA1_c02710at 260.164 kb on + strand, within PGA1_c02710at 260.172 kb on - strand, within PGA1_c02710at 260.212 kb on + strand, within PGA1_c02710at 260.212 kb on + strand, within PGA1_c02710at 260.264 kb on + strand, within PGA1_c02710at 260.287 kb on - strand, within PGA1_c02710at 260.322 kb on + strandat 260.353 kb on - strandat 260.353 kb on - strandat 260.408 kb on - strandat 260.422 kb on - strandat 260.450 kb on - strandat 260.477 kb on + strandat 260.493 kb on + strandat 260.493 kb on + strandat 260.513 kb on + strandat 260.548 kb on - strandat 260.634 kb on - strand, within PGA1_c02720at 260.635 kb on - strand, within PGA1_c02720at 260.664 kb on - strand, within PGA1_c02720at 260.664 kb on - strand, within PGA1_c02720at 260.671 kb on + strand, within PGA1_c02720at 260.671 kb on + strand, within PGA1_c02720at 260.671 kb on + strand, within PGA1_c02720at 260.679 kb on - strand, within PGA1_c02720at 260.680 kb on - strand, within PGA1_c02720at 260.702 kb on + strand, within PGA1_c02720at 260.732 kb on + strand, within PGA1_c02720at 260.740 kb on - strand, within PGA1_c02720at 260.763 kb on - strand, within PGA1_c02720at 260.806 kb on + strand, within PGA1_c02720at 260.807 kb on - strand, within PGA1_c02720at 260.834 kb on + strand, within PGA1_c02720at 260.836 kb on + strand, within PGA1_c02720at 260.836 kb on + strand, within PGA1_c02720at 260.844 kb on - strand, within PGA1_c02720at 260.847 kb on + strand, within PGA1_c02720at 260.847 kb on + strand, within PGA1_c02720at 260.847 kb on + strand, within PGA1_c02720at 260.847 kb on + strand, within PGA1_c02720at 260.992 kb on + strand, within PGA1_c02720at 261.055 kb on - strand, within PGA1_c02720at 261.117 kb on - strand, within PGA1_c02720at 261.151 kb on + strand, within PGA1_c02720at 261.179 kb on + strand, within PGA1_c02720at 261.179 kb on + strand, within PGA1_c02720at 261.215 kb on + strand, within PGA1_c02720at 261.219 kb on + strand, within PGA1_c02720at 261.220 kb on + strand, within PGA1_c02720at 261.277 kb on - strand, within PGA1_c02720at 261.292 kb on + strand, within PGA1_c02720at 261.325 kb on - strandat 261.385 kb on + strandat 261.393 kb on - strandat 261.407 kb on - strandat 261.411 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.002 mg/ml
remove
258,146 + PGA1_c02700 0.28 -0.2
258,216 + PGA1_c02700 0.35 -0.2
258,268 - PGA1_c02700 0.40 -0.0
258,271 - PGA1_c02700 0.41 -0.8
258,294 + PGA1_c02700 0.43 +0.7
258,294 + PGA1_c02700 0.43 -0.3
258,302 - PGA1_c02700 0.44 -0.8
258,345 - PGA1_c02700 0.48 -0.7
258,376 + PGA1_c02700 0.51 -1.3
258,376 - PGA1_c02700 0.51 -1.2
258,412 - PGA1_c02700 0.55 -0.6
258,421 + PGA1_c02700 0.55 +0.2
258,429 - PGA1_c02700 0.56 -1.2
258,431 + PGA1_c02700 0.56 -0.2
258,501 + PGA1_c02700 0.63 -1.0
258,509 - PGA1_c02700 0.64 +0.2
258,515 - PGA1_c02700 0.65 -2.2
258,533 + PGA1_c02700 0.66 +0.6
258,541 - PGA1_c02700 0.67 -0.1
258,562 - PGA1_c02700 0.69 -1.3
258,593 + PGA1_c02700 0.72 -1.2
258,600 + PGA1_c02700 0.73 -0.7
258,601 - PGA1_c02700 0.73 -1.3
258,609 - PGA1_c02700 0.74 -0.5
258,620 - PGA1_c02700 0.75 +0.9
258,653 + PGA1_c02700 0.78 -2.3
258,688 + PGA1_c02700 0.82 +0.2
258,718 + PGA1_c02700 0.85 -3.4
258,726 - PGA1_c02700 0.86 +0.4
258,733 - PGA1_c02700 0.86 +0.5
258,746 + PGA1_c02700 0.87 -2.5
258,764 + PGA1_c02700 0.89 -2.6
258,877 + +1.0
258,920 - -1.1
258,939 - -2.1
258,939 - +2.2
258,982 - -1.1
259,026 - -0.9
259,032 + -1.0
259,032 + +1.4
259,034 + -0.9
259,042 - +0.1
259,049 + -1.9
259,074 - -0.1
259,090 + +0.7
259,125 - +0.9
259,191 + -0.4
259,226 + -1.6
259,244 + -2.5
259,252 - -1.2
259,279 + PGA1_c02710 0.11 +0.2
259,324 + PGA1_c02710 0.14 +0.1
259,324 + PGA1_c02710 0.14 +0.3
259,376 + PGA1_c02710 0.18 +0.2
259,384 - PGA1_c02710 0.19 -0.2
259,421 - PGA1_c02710 0.22 +2.7
259,443 - PGA1_c02710 0.23 +0.3
259,496 + PGA1_c02710 0.27 +1.3
259,503 + PGA1_c02710 0.28 +0.5
259,551 + PGA1_c02710 0.32 +0.1
259,553 + PGA1_c02710 0.32 -2.9
259,553 + PGA1_c02710 0.32 +1.1
259,561 + PGA1_c02710 0.32 +3.1
259,561 + PGA1_c02710 0.32 -0.1
259,569 - PGA1_c02710 0.33 +0.6
259,569 - PGA1_c02710 0.33 -0.5
259,569 - PGA1_c02710 0.33 +0.2
259,617 - PGA1_c02710 0.37 +0.2
259,620 + PGA1_c02710 0.37 -0.6
259,645 + PGA1_c02710 0.39 +1.5
259,678 + PGA1_c02710 0.41 -0.1
259,693 + PGA1_c02710 0.42 +0.5
259,711 - PGA1_c02710 0.44 +0.2
259,767 + PGA1_c02710 0.48 -0.1
259,767 + PGA1_c02710 0.48 -0.5
259,767 + PGA1_c02710 0.48 +0.8
259,767 + PGA1_c02710 0.48 -0.6
259,809 - PGA1_c02710 0.51 -0.7
259,885 - PGA1_c02710 0.57 +0.9
259,885 - PGA1_c02710 0.57 +0.3
259,885 - PGA1_c02710 0.57 -0.2
259,927 + PGA1_c02710 0.60 +0.5
259,998 - PGA1_c02710 0.66 +1.1
260,005 + PGA1_c02710 0.66 -0.1
260,008 + PGA1_c02710 0.67 +1.4
260,016 - PGA1_c02710 0.67 +1.6
260,016 - PGA1_c02710 0.67 +0.5
260,128 + PGA1_c02710 0.76 +0.2
260,164 + PGA1_c02710 0.79 +0.6
260,172 - PGA1_c02710 0.79 +0.8
260,212 + PGA1_c02710 0.82 +1.1
260,212 + PGA1_c02710 0.82 +0.8
260,264 + PGA1_c02710 0.86 -0.1
260,287 - PGA1_c02710 0.88 +0.6
260,322 + +0.8
260,353 - -1.3
260,353 - -2.9
260,408 - -0.0
260,422 - +0.1
260,450 - +0.7
260,477 + +0.1
260,493 + +2.0
260,493 + -1.3
260,513 + -0.0
260,548 - -0.3
260,634 - PGA1_c02720 0.13 +1.4
260,635 - PGA1_c02720 0.14 -1.4
260,664 - PGA1_c02720 0.17 +0.3
260,664 - PGA1_c02720 0.17 +1.5
260,671 + PGA1_c02720 0.18 +0.2
260,671 + PGA1_c02720 0.18 +1.2
260,671 + PGA1_c02720 0.18 -0.4
260,679 - PGA1_c02720 0.19 -0.4
260,680 - PGA1_c02720 0.19 +0.6
260,702 + PGA1_c02720 0.21 +0.2
260,732 + PGA1_c02720 0.25 +0.7
260,740 - PGA1_c02720 0.26 +0.4
260,763 - PGA1_c02720 0.28 -0.5
260,806 + PGA1_c02720 0.33 -0.4
260,807 - PGA1_c02720 0.33 +1.3
260,834 + PGA1_c02720 0.36 +1.7
260,836 + PGA1_c02720 0.36 +0.5
260,836 + PGA1_c02720 0.36 +0.7
260,844 - PGA1_c02720 0.37 +0.8
260,847 + PGA1_c02720 0.38 -0.0
260,847 + PGA1_c02720 0.38 +1.3
260,847 + PGA1_c02720 0.38 +0.3
260,847 + PGA1_c02720 0.38 -0.0
260,992 + PGA1_c02720 0.54 +0.6
261,055 - PGA1_c02720 0.61 -0.1
261,117 - PGA1_c02720 0.68 +0.5
261,151 + PGA1_c02720 0.72 -0.2
261,179 + PGA1_c02720 0.75 +2.3
261,179 + PGA1_c02720 0.75 +1.7
261,215 + PGA1_c02720 0.79 -1.5
261,219 + PGA1_c02720 0.80 -1.7
261,220 + PGA1_c02720 0.80 -3.6
261,277 - PGA1_c02720 0.86 -0.2
261,292 + PGA1_c02720 0.88 +0.2
261,325 - -1.4
261,385 + -1.3
261,393 - -0.4
261,407 - +0.1
261,411 - +0.5

Or see this region's nucleotide sequence