Experiment: m.b. Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c24500 and PGA1_c24510 are separated by 296 nucleotides PGA1_c24510 and PGA1_c24520 are separated by 13 nucleotides
PGA1_c24500: PGA1_c24500 - putative signal transduction response regulator receiver, at 2,551,910 to 2,552,629
_c24500
PGA1_c24510: PGA1_c24510 - Uncharacterized protein conserved in bacteria, at 2,552,926 to 2,554,149
_c24510
PGA1_c24520: PGA1_c24520 - Uncharacterized protein conserved in bacteria, at 2,554,163 to 2,555,560
_c24520
Position (kb)
2552
2553
2554
2555 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2552.018 kb on + strand, within PGA1_c24500 at 2552.024 kb on + strand, within PGA1_c24500 at 2552.109 kb on + strand, within PGA1_c24500 at 2552.164 kb on - strand, within PGA1_c24500 at 2552.195 kb on + strand, within PGA1_c24500 at 2552.228 kb on + strand, within PGA1_c24500 at 2552.320 kb on + strand, within PGA1_c24500 at 2552.369 kb on - strand, within PGA1_c24500 at 2552.415 kb on + strand, within PGA1_c24500 at 2552.415 kb on + strand, within PGA1_c24500 at 2552.431 kb on - strand, within PGA1_c24500 at 2552.433 kb on + strand, within PGA1_c24500 at 2552.441 kb on - strand, within PGA1_c24500 at 2552.450 kb on + strand, within PGA1_c24500 at 2552.455 kb on + strand, within PGA1_c24500 at 2552.468 kb on - strand, within PGA1_c24500 at 2552.478 kb on - strand, within PGA1_c24500 at 2552.501 kb on - strand, within PGA1_c24500 at 2552.593 kb on + strand at 2552.602 kb on - strand at 2552.656 kb on - strand at 2552.739 kb on + strand at 2552.763 kb on - strand at 2552.766 kb on - strand at 2552.806 kb on - strand at 2552.864 kb on + strand at 2552.872 kb on - strand at 2552.872 kb on - strand at 2552.890 kb on - strand at 2552.941 kb on + strand at 2552.949 kb on - strand at 2552.949 kb on - strand at 2552.958 kb on + strand at 2553.018 kb on + strand at 2553.047 kb on + strand at 2553.047 kb on + strand at 2553.047 kb on + strand at 2553.104 kb on - strand, within PGA1_c24510 at 2553.141 kb on - strand, within PGA1_c24510 at 2553.284 kb on + strand, within PGA1_c24510 at 2553.433 kb on + strand, within PGA1_c24510 at 2553.438 kb on + strand, within PGA1_c24510 at 2553.441 kb on - strand, within PGA1_c24510 at 2553.457 kb on + strand, within PGA1_c24510 at 2553.541 kb on - strand, within PGA1_c24510 at 2553.607 kb on + strand, within PGA1_c24510 at 2553.666 kb on - strand, within PGA1_c24510 at 2553.681 kb on - strand, within PGA1_c24510 at 2553.729 kb on + strand, within PGA1_c24510 at 2553.729 kb on + strand, within PGA1_c24510 at 2553.762 kb on - strand, within PGA1_c24510 at 2553.792 kb on - strand, within PGA1_c24510 at 2553.793 kb on + strand, within PGA1_c24510 at 2553.816 kb on - strand, within PGA1_c24510 at 2553.820 kb on - strand, within PGA1_c24510 at 2553.910 kb on + strand, within PGA1_c24510 at 2553.938 kb on - strand, within PGA1_c24510 at 2553.950 kb on + strand, within PGA1_c24510 at 2553.950 kb on + strand, within PGA1_c24510 at 2553.950 kb on + strand, within PGA1_c24510 at 2553.958 kb on - strand, within PGA1_c24510 at 2553.963 kb on - strand, within PGA1_c24510 at 2553.964 kb on - strand, within PGA1_c24510 at 2553.966 kb on + strand, within PGA1_c24510 at 2553.983 kb on + strand, within PGA1_c24510 at 2554.023 kb on - strand, within PGA1_c24510 at 2554.023 kb on - strand, within PGA1_c24510 at 2554.034 kb on + strand at 2554.036 kb on + strand at 2554.058 kb on - strand at 2554.103 kb on - strand at 2554.116 kb on + strand at 2554.124 kb on - strand at 2554.124 kb on - strand at 2554.137 kb on + strand at 2554.242 kb on - strand at 2554.330 kb on + strand, within PGA1_c24520 at 2554.388 kb on - strand, within PGA1_c24520 at 2554.397 kb on + strand, within PGA1_c24520 at 2554.424 kb on + strand, within PGA1_c24520 at 2554.429 kb on + strand, within PGA1_c24520 at 2554.468 kb on + strand, within PGA1_c24520 at 2554.476 kb on - strand, within PGA1_c24520 at 2554.538 kb on + strand, within PGA1_c24520 at 2554.597 kb on + strand, within PGA1_c24520 at 2554.610 kb on - strand, within PGA1_c24520 at 2554.610 kb on - strand, within PGA1_c24520 at 2554.629 kb on - strand, within PGA1_c24520 at 2554.799 kb on - strand, within PGA1_c24520 at 2554.924 kb on - strand, within PGA1_c24520 at 2554.949 kb on + strand, within PGA1_c24520 at 2554.989 kb on - strand, within PGA1_c24520 at 2555.014 kb on - strand, within PGA1_c24520 at 2555.030 kb on + strand, within PGA1_c24520 at 2555.053 kb on + strand, within PGA1_c24520 at 2555.071 kb on - strand, within PGA1_c24520 at 2555.131 kb on + strand, within PGA1_c24520
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.002 mg/ml remove 2,552,018 + PGA1_c24500 0.15 -0.3 2,552,024 + PGA1_c24500 0.16 +0.8 2,552,109 + PGA1_c24500 0.28 +0.2 2,552,164 - PGA1_c24500 0.35 +1.9 2,552,195 + PGA1_c24500 0.40 +0.4 2,552,228 + PGA1_c24500 0.44 -0.6 2,552,320 + PGA1_c24500 0.57 +0.5 2,552,369 - PGA1_c24500 0.64 +1.0 2,552,415 + PGA1_c24500 0.70 -0.9 2,552,415 + PGA1_c24500 0.70 +0.9 2,552,431 - PGA1_c24500 0.72 -0.9 2,552,433 + PGA1_c24500 0.73 -2.1 2,552,441 - PGA1_c24500 0.74 -0.1 2,552,450 + PGA1_c24500 0.75 -2.2 2,552,455 + PGA1_c24500 0.76 -0.9 2,552,468 - PGA1_c24500 0.78 -0.7 2,552,478 - PGA1_c24500 0.79 +0.1 2,552,501 - PGA1_c24500 0.82 -0.2 2,552,593 + -0.2 2,552,602 - -0.2 2,552,656 - +1.0 2,552,739 + -0.2 2,552,763 - +1.3 2,552,766 - +0.9 2,552,806 - -0.9 2,552,864 + +1.4 2,552,872 - +1.1 2,552,872 - -0.5 2,552,890 - -1.5 2,552,941 + +0.8 2,552,949 - +0.8 2,552,949 - -2.3 2,552,958 + +0.0 2,553,018 + +0.5 2,553,047 + +2.4 2,553,047 + +0.7 2,553,047 + -1.9 2,553,104 - PGA1_c24510 0.15 -0.8 2,553,141 - PGA1_c24510 0.18 -1.1 2,553,284 + PGA1_c24510 0.29 +0.3 2,553,433 + PGA1_c24510 0.41 +0.4 2,553,438 + PGA1_c24510 0.42 -0.3 2,553,441 - PGA1_c24510 0.42 -0.9 2,553,457 + PGA1_c24510 0.43 +0.3 2,553,541 - PGA1_c24510 0.50 +1.1 2,553,607 + PGA1_c24510 0.56 -1.2 2,553,666 - PGA1_c24510 0.60 +0.5 2,553,681 - PGA1_c24510 0.62 +0.6 2,553,729 + PGA1_c24510 0.66 -1.3 2,553,729 + PGA1_c24510 0.66 -0.5 2,553,762 - PGA1_c24510 0.68 -1.9 2,553,792 - PGA1_c24510 0.71 -1.1 2,553,793 + PGA1_c24510 0.71 -0.9 2,553,816 - PGA1_c24510 0.73 +1.3 2,553,820 - PGA1_c24510 0.73 +0.2 2,553,910 + PGA1_c24510 0.80 -0.9 2,553,938 - PGA1_c24510 0.83 -0.7 2,553,950 + PGA1_c24510 0.84 +0.1 2,553,950 + PGA1_c24510 0.84 +0.1 2,553,950 + PGA1_c24510 0.84 -0.1 2,553,958 - PGA1_c24510 0.84 +1.3 2,553,963 - PGA1_c24510 0.85 -0.6 2,553,964 - PGA1_c24510 0.85 +0.9 2,553,966 + PGA1_c24510 0.85 -0.8 2,553,983 + PGA1_c24510 0.86 -0.1 2,554,023 - PGA1_c24510 0.90 -2.7 2,554,023 - PGA1_c24510 0.90 -1.9 2,554,034 + -0.5 2,554,036 + +1.1 2,554,058 - +0.6 2,554,103 - -0.4 2,554,116 + -1.1 2,554,124 - +0.9 2,554,124 - +0.4 2,554,137 + +0.8 2,554,242 - -0.5 2,554,330 + PGA1_c24520 0.12 -0.5 2,554,388 - PGA1_c24520 0.16 +1.3 2,554,397 + PGA1_c24520 0.17 -0.3 2,554,424 + PGA1_c24520 0.19 -1.5 2,554,429 + PGA1_c24520 0.19 -0.3 2,554,468 + PGA1_c24520 0.22 +0.3 2,554,476 - PGA1_c24520 0.22 +0.3 2,554,538 + PGA1_c24520 0.27 +0.8 2,554,597 + PGA1_c24520 0.31 +1.6 2,554,610 - PGA1_c24520 0.32 -0.3 2,554,610 - PGA1_c24520 0.32 +1.1 2,554,629 - PGA1_c24520 0.33 -0.4 2,554,799 - PGA1_c24520 0.45 -1.6 2,554,924 - PGA1_c24520 0.54 +0.5 2,554,949 + PGA1_c24520 0.56 -0.8 2,554,989 - PGA1_c24520 0.59 +0.2 2,555,014 - PGA1_c24520 0.61 -0.8 2,555,030 + PGA1_c24520 0.62 +0.0 2,555,053 + PGA1_c24520 0.64 -1.1 2,555,071 - PGA1_c24520 0.65 +1.6 2,555,131 + PGA1_c24520 0.69 -0.6
Or see this region's nucleotide sequence