Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c01810

Experiment: m.b. Benzalkonium Chloride 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c01770 and PGA1_c01780 are separated by 12 nucleotidesPGA1_c01780 and PGA1_c01790 are separated by 12 nucleotidesPGA1_c01790 and PGA1_c01800 are separated by 0 nucleotidesPGA1_c01800 and PGA1_c01810 are separated by 208 nucleotidesPGA1_c01810 and PGA1_c01820 are separated by 80 nucleotides PGA1_c01770: PGA1_c01770 - 30S ribosomal protein S5, at 163,494 to 164,060 _c01770 PGA1_c01780: PGA1_c01780 - 50S ribosomal protein L30, at 164,073 to 164,261 _c01780 PGA1_c01790: PGA1_c01790 - hypothetical protein, at 164,274 to 164,468 _c01790 PGA1_c01800: PGA1_c01800 - hypothetical protein, at 164,469 to 164,687 _c01800 PGA1_c01810: PGA1_c01810 - putative transcriptional regulator, GntR family, at 164,896 to 166,308 _c01810 PGA1_c01820: PGA1_c01820 - Predicted permeases, at 166,389 to 167,333 _c01820 Position (kb) 164 165 166 167Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 164.341 kb on - strand, within PGA1_c01790at 164.439 kb on + strand, within PGA1_c01790at 164.442 kb on - strand, within PGA1_c01790at 164.442 kb on - strand, within PGA1_c01790at 164.447 kb on - strand, within PGA1_c01790at 164.447 kb on - strand, within PGA1_c01790at 164.457 kb on - strandat 164.489 kb on + strandat 164.497 kb on - strand, within PGA1_c01800at 164.502 kb on - strand, within PGA1_c01800at 164.504 kb on + strand, within PGA1_c01800at 164.504 kb on + strand, within PGA1_c01800at 164.504 kb on + strand, within PGA1_c01800at 164.504 kb on + strand, within PGA1_c01800at 164.512 kb on - strand, within PGA1_c01800at 164.512 kb on - strand, within PGA1_c01800at 164.512 kb on - strand, within PGA1_c01800at 164.512 kb on - strand, within PGA1_c01800at 164.567 kb on + strand, within PGA1_c01800at 164.608 kb on + strand, within PGA1_c01800at 164.626 kb on - strand, within PGA1_c01800at 164.648 kb on + strand, within PGA1_c01800at 164.671 kb on + strandat 164.671 kb on + strandat 164.761 kb on + strandat 164.785 kb on - strandat 164.798 kb on + strandat 164.806 kb on - strandat 164.853 kb on + strandat 164.859 kb on - strandat 164.889 kb on + strandat 164.899 kb on + strandat 164.902 kb on - strandat 164.907 kb on - strandat 164.918 kb on - strandat 164.948 kb on + strandat 164.958 kb on - strandat 165.015 kb on + strandat 165.055 kb on + strand, within PGA1_c01810at 165.070 kb on - strand, within PGA1_c01810at 165.072 kb on + strand, within PGA1_c01810at 165.124 kb on + strand, within PGA1_c01810at 165.132 kb on - strand, within PGA1_c01810at 165.137 kb on - strand, within PGA1_c01810at 165.137 kb on - strand, within PGA1_c01810at 165.189 kb on - strand, within PGA1_c01810at 165.194 kb on - strand, within PGA1_c01810at 165.199 kb on - strand, within PGA1_c01810at 165.221 kb on - strand, within PGA1_c01810at 165.273 kb on - strand, within PGA1_c01810at 165.312 kb on + strand, within PGA1_c01810at 165.312 kb on + strand, within PGA1_c01810at 165.312 kb on + strand, within PGA1_c01810at 165.320 kb on - strand, within PGA1_c01810at 165.326 kb on + strand, within PGA1_c01810at 165.344 kb on - strand, within PGA1_c01810at 165.349 kb on - strand, within PGA1_c01810at 165.381 kb on + strand, within PGA1_c01810at 165.381 kb on + strand, within PGA1_c01810at 165.432 kb on + strand, within PGA1_c01810at 165.458 kb on - strand, within PGA1_c01810at 165.458 kb on - strand, within PGA1_c01810at 165.464 kb on + strand, within PGA1_c01810at 165.498 kb on + strand, within PGA1_c01810at 165.498 kb on + strand, within PGA1_c01810at 165.565 kb on + strand, within PGA1_c01810at 165.589 kb on - strand, within PGA1_c01810at 165.622 kb on - strand, within PGA1_c01810at 165.622 kb on - strand, within PGA1_c01810at 165.714 kb on + strand, within PGA1_c01810at 165.752 kb on + strand, within PGA1_c01810at 165.760 kb on - strand, within PGA1_c01810at 165.778 kb on + strand, within PGA1_c01810at 165.778 kb on + strand, within PGA1_c01810at 165.781 kb on - strand, within PGA1_c01810at 165.786 kb on - strand, within PGA1_c01810at 165.839 kb on + strand, within PGA1_c01810at 165.934 kb on - strand, within PGA1_c01810at 165.979 kb on - strand, within PGA1_c01810at 166.008 kb on + strand, within PGA1_c01810at 166.008 kb on + strand, within PGA1_c01810at 166.016 kb on - strand, within PGA1_c01810at 166.031 kb on + strand, within PGA1_c01810at 166.041 kb on - strand, within PGA1_c01810at 166.041 kb on - strand, within PGA1_c01810at 166.082 kb on - strand, within PGA1_c01810at 166.179 kb on + strandat 166.187 kb on - strandat 166.187 kb on - strandat 166.341 kb on - strandat 166.388 kb on - strandat 166.413 kb on - strandat 166.449 kb on + strandat 166.451 kb on + strandat 166.459 kb on - strandat 166.477 kb on + strandat 166.494 kb on - strand, within PGA1_c01820at 166.513 kb on + strand, within PGA1_c01820at 166.521 kb on - strand, within PGA1_c01820at 166.521 kb on - strand, within PGA1_c01820at 166.546 kb on - strand, within PGA1_c01820at 166.555 kb on + strand, within PGA1_c01820at 166.590 kb on - strand, within PGA1_c01820at 166.592 kb on - strand, within PGA1_c01820at 166.660 kb on + strand, within PGA1_c01820at 166.686 kb on - strand, within PGA1_c01820at 166.693 kb on + strand, within PGA1_c01820at 166.693 kb on + strand, within PGA1_c01820at 166.701 kb on - strand, within PGA1_c01820at 166.701 kb on - strand, within PGA1_c01820at 166.703 kb on + strand, within PGA1_c01820at 166.739 kb on - strand, within PGA1_c01820at 166.744 kb on - strand, within PGA1_c01820at 166.744 kb on - strand, within PGA1_c01820at 166.744 kb on - strand, within PGA1_c01820at 166.758 kb on - strand, within PGA1_c01820at 166.766 kb on - strand, within PGA1_c01820at 166.766 kb on - strand, within PGA1_c01820at 166.795 kb on + strand, within PGA1_c01820at 166.821 kb on - strand, within PGA1_c01820at 166.831 kb on - strand, within PGA1_c01820at 166.835 kb on + strand, within PGA1_c01820at 166.929 kb on - strand, within PGA1_c01820at 166.942 kb on + strand, within PGA1_c01820at 166.972 kb on - strand, within PGA1_c01820at 166.979 kb on + strand, within PGA1_c01820at 166.983 kb on + strand, within PGA1_c01820at 166.996 kb on - strand, within PGA1_c01820at 167.026 kb on + strand, within PGA1_c01820at 167.040 kb on - strand, within PGA1_c01820at 167.049 kb on + strand, within PGA1_c01820at 167.063 kb on - strand, within PGA1_c01820at 167.132 kb on + strand, within PGA1_c01820at 167.132 kb on + strand, within PGA1_c01820at 167.132 kb on + strand, within PGA1_c01820at 167.140 kb on - strand, within PGA1_c01820at 167.140 kb on - strand, within PGA1_c01820at 167.140 kb on - strand, within PGA1_c01820at 167.165 kb on + strand, within PGA1_c01820at 167.191 kb on - strand, within PGA1_c01820at 167.193 kb on + strand, within PGA1_c01820at 167.196 kb on - strand, within PGA1_c01820at 167.233 kb on + strand, within PGA1_c01820at 167.233 kb on + strand, within PGA1_c01820at 167.233 kb on + strand, within PGA1_c01820at 167.301 kb on + strandat 167.301 kb on + strandat 167.301 kb on + strandat 167.301 kb on + strandat 167.301 kb on + strandat 167.301 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.002 mg/ml
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164,341 - PGA1_c01790 0.34 +0.9
164,439 + PGA1_c01790 0.85 -0.7
164,442 - PGA1_c01790 0.86 +0.4
164,442 - PGA1_c01790 0.86 +0.6
164,447 - PGA1_c01790 0.89 +2.7
164,447 - PGA1_c01790 0.89 -0.2
164,457 - +0.8
164,489 + +1.4
164,497 - PGA1_c01800 0.13 +1.9
164,502 - PGA1_c01800 0.15 +0.7
164,504 + PGA1_c01800 0.16 +0.3
164,504 + PGA1_c01800 0.16 -0.9
164,504 + PGA1_c01800 0.16 +1.7
164,504 + PGA1_c01800 0.16 -1.9
164,512 - PGA1_c01800 0.20 -0.9
164,512 - PGA1_c01800 0.20 -1.7
164,512 - PGA1_c01800 0.20 +0.5
164,512 - PGA1_c01800 0.20 -0.7
164,567 + PGA1_c01800 0.45 -1.0
164,608 + PGA1_c01800 0.63 -1.6
164,626 - PGA1_c01800 0.72 -0.4
164,648 + PGA1_c01800 0.82 -0.7
164,671 + +0.7
164,671 + -2.0
164,761 + +1.5
164,785 - -0.8
164,798 + +0.7
164,806 - +0.5
164,853 + +1.1
164,859 - +0.6
164,889 + +1.5
164,899 + +0.1
164,902 - +0.7
164,907 - +0.1
164,918 - -1.2
164,948 + -0.7
164,958 - +0.3
165,015 + +0.8
165,055 + PGA1_c01810 0.11 -0.8
165,070 - PGA1_c01810 0.12 +1.2
165,072 + PGA1_c01810 0.12 -0.2
165,124 + PGA1_c01810 0.16 +0.9
165,132 - PGA1_c01810 0.17 +0.1
165,137 - PGA1_c01810 0.17 +0.6
165,137 - PGA1_c01810 0.17 -2.6
165,189 - PGA1_c01810 0.21 -0.3
165,194 - PGA1_c01810 0.21 -0.5
165,199 - PGA1_c01810 0.21 +1.7
165,221 - PGA1_c01810 0.23 +0.7
165,273 - PGA1_c01810 0.27 +0.2
165,312 + PGA1_c01810 0.29 -0.7
165,312 + PGA1_c01810 0.29 +0.5
165,312 + PGA1_c01810 0.29 -0.7
165,320 - PGA1_c01810 0.30 -1.0
165,326 + PGA1_c01810 0.30 -0.7
165,344 - PGA1_c01810 0.32 -1.7
165,349 - PGA1_c01810 0.32 -1.1
165,381 + PGA1_c01810 0.34 +0.7
165,381 + PGA1_c01810 0.34 -1.5
165,432 + PGA1_c01810 0.38 +0.7
165,458 - PGA1_c01810 0.40 -1.8
165,458 - PGA1_c01810 0.40 -0.0
165,464 + PGA1_c01810 0.40 -0.9
165,498 + PGA1_c01810 0.43 -2.8
165,498 + PGA1_c01810 0.43 -2.8
165,565 + PGA1_c01810 0.47 +0.7
165,589 - PGA1_c01810 0.49 -0.5
165,622 - PGA1_c01810 0.51 +1.3
165,622 - PGA1_c01810 0.51 +0.4
165,714 + PGA1_c01810 0.58 -1.1
165,752 + PGA1_c01810 0.61 -0.6
165,760 - PGA1_c01810 0.61 -0.9
165,778 + PGA1_c01810 0.62 -0.1
165,778 + PGA1_c01810 0.62 -0.7
165,781 - PGA1_c01810 0.63 +0.1
165,786 - PGA1_c01810 0.63 -0.7
165,839 + PGA1_c01810 0.67 -2.4
165,934 - PGA1_c01810 0.73 -0.0
165,979 - PGA1_c01810 0.77 +0.7
166,008 + PGA1_c01810 0.79 +1.5
166,008 + PGA1_c01810 0.79 -0.1
166,016 - PGA1_c01810 0.79 +0.1
166,031 + PGA1_c01810 0.80 -3.0
166,041 - PGA1_c01810 0.81 +0.2
166,041 - PGA1_c01810 0.81 -0.2
166,082 - PGA1_c01810 0.84 -1.8
166,179 + +1.1
166,187 - -0.5
166,187 - +0.7
166,341 - +0.5
166,388 - -0.3
166,413 - -3.0
166,449 + -2.0
166,451 + -0.2
166,459 - -0.1
166,477 + +0.4
166,494 - PGA1_c01820 0.11 +0.5
166,513 + PGA1_c01820 0.13 +0.3
166,521 - PGA1_c01820 0.14 +1.1
166,521 - PGA1_c01820 0.14 +0.6
166,546 - PGA1_c01820 0.17 +1.1
166,555 + PGA1_c01820 0.18 +0.8
166,590 - PGA1_c01820 0.21 -1.5
166,592 - PGA1_c01820 0.21 -0.9
166,660 + PGA1_c01820 0.29 +0.8
166,686 - PGA1_c01820 0.31 -0.8
166,693 + PGA1_c01820 0.32 +0.3
166,693 + PGA1_c01820 0.32 +0.4
166,701 - PGA1_c01820 0.33 +0.4
166,701 - PGA1_c01820 0.33 -0.2
166,703 + PGA1_c01820 0.33 +1.7
166,739 - PGA1_c01820 0.37 +1.2
166,744 - PGA1_c01820 0.38 +0.4
166,744 - PGA1_c01820 0.38 +0.5
166,744 - PGA1_c01820 0.38 +0.8
166,758 - PGA1_c01820 0.39 +0.0
166,766 - PGA1_c01820 0.40 -0.2
166,766 - PGA1_c01820 0.40 -1.4
166,795 + PGA1_c01820 0.43 +1.1
166,821 - PGA1_c01820 0.46 +1.1
166,831 - PGA1_c01820 0.47 -0.5
166,835 + PGA1_c01820 0.47 +2.4
166,929 - PGA1_c01820 0.57 +2.1
166,942 + PGA1_c01820 0.59 +0.3
166,972 - PGA1_c01820 0.62 -3.1
166,979 + PGA1_c01820 0.62 -2.3
166,983 + PGA1_c01820 0.63 -2.1
166,996 - PGA1_c01820 0.64 +0.8
167,026 + PGA1_c01820 0.67 -0.1
167,040 - PGA1_c01820 0.69 -0.3
167,049 + PGA1_c01820 0.70 +1.3
167,063 - PGA1_c01820 0.71 +1.4
167,132 + PGA1_c01820 0.79 -0.9
167,132 + PGA1_c01820 0.79 -0.1
167,132 + PGA1_c01820 0.79 -0.2
167,140 - PGA1_c01820 0.79 -0.2
167,140 - PGA1_c01820 0.79 +0.2
167,140 - PGA1_c01820 0.79 +0.6
167,165 + PGA1_c01820 0.82 +0.1
167,191 - PGA1_c01820 0.85 -0.4
167,193 + PGA1_c01820 0.85 -1.3
167,196 - PGA1_c01820 0.85 -1.7
167,233 + PGA1_c01820 0.89 -1.1
167,233 + PGA1_c01820 0.89 +0.2
167,233 + PGA1_c01820 0.89 +0.2
167,301 + -1.5
167,301 + +0.0
167,301 + -2.2
167,301 + -0.5
167,301 + -0.6
167,301 + -0.5

Or see this region's nucleotide sequence