Experiment: m.b. Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c16080 and PGA1_c16090 are separated by 409 nucleotides PGA1_c16090 and PGA1_c16100 are separated by 114 nucleotides
PGA1_c16080: PGA1_c16080 - ribosomal RNA large subunit methyltransferase J, at 1,667,926 to 1,668,681
_c16080
PGA1_c16090: PGA1_c16090 - putative tRNA-processing ribonuclease, at 1,669,091 to 1,669,954
_c16090
PGA1_c16100: PGA1_c16100 - putative cardiolipin synthetase, at 1,670,069 to 1,671,487
_c16100
Position (kb)
1669
1670 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1668.670 kb on + strand at 1668.717 kb on + strand at 1668.720 kb on - strand at 1668.722 kb on + strand at 1668.730 kb on - strand at 1668.762 kb on + strand at 1668.770 kb on - strand at 1668.806 kb on - strand at 1668.842 kb on - strand at 1668.850 kb on - strand at 1668.940 kb on + strand at 1668.966 kb on + strand at 1668.987 kb on + strand at 1669.036 kb on + strand at 1669.088 kb on - strand at 1669.113 kb on + strand at 1669.128 kb on + strand at 1669.130 kb on + strand at 1669.130 kb on + strand at 1669.130 kb on + strand at 1669.169 kb on - strand at 1669.282 kb on - strand, within PGA1_c16090 at 1669.310 kb on - strand, within PGA1_c16090 at 1669.380 kb on - strand, within PGA1_c16090 at 1669.402 kb on - strand, within PGA1_c16090 at 1669.412 kb on - strand, within PGA1_c16090 at 1669.453 kb on - strand, within PGA1_c16090 at 1669.496 kb on - strand, within PGA1_c16090 at 1669.517 kb on - strand, within PGA1_c16090 at 1669.547 kb on - strand, within PGA1_c16090 at 1669.580 kb on + strand, within PGA1_c16090 at 1669.661 kb on - strand, within PGA1_c16090 at 1669.719 kb on + strand, within PGA1_c16090 at 1669.802 kb on - strand, within PGA1_c16090 at 1669.812 kb on - strand, within PGA1_c16090 at 1670.091 kb on + strand at 1670.118 kb on - strand at 1670.240 kb on - strand, within PGA1_c16100 at 1670.272 kb on + strand, within PGA1_c16100 at 1670.272 kb on + strand, within PGA1_c16100 at 1670.280 kb on - strand, within PGA1_c16100 at 1670.280 kb on - strand, within PGA1_c16100 at 1670.280 kb on - strand, within PGA1_c16100 at 1670.280 kb on - strand, within PGA1_c16100 at 1670.305 kb on + strand, within PGA1_c16100 at 1670.305 kb on + strand, within PGA1_c16100 at 1670.313 kb on - strand, within PGA1_c16100 at 1670.322 kb on + strand, within PGA1_c16100 at 1670.411 kb on - strand, within PGA1_c16100 at 1670.462 kb on - strand, within PGA1_c16100 at 1670.473 kb on - strand, within PGA1_c16100 at 1670.496 kb on - strand, within PGA1_c16100 at 1670.546 kb on - strand, within PGA1_c16100 at 1670.595 kb on + strand, within PGA1_c16100 at 1670.595 kb on + strand, within PGA1_c16100 at 1670.609 kb on + strand, within PGA1_c16100 at 1670.626 kb on + strand, within PGA1_c16100 at 1670.662 kb on - strand, within PGA1_c16100 at 1670.673 kb on + strand, within PGA1_c16100 at 1670.776 kb on - strand, within PGA1_c16100 at 1670.781 kb on - strand, within PGA1_c16100 at 1670.818 kb on + strand, within PGA1_c16100 at 1670.932 kb on + strand, within PGA1_c16100 at 1670.947 kb on - strand, within PGA1_c16100
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.002 mg/ml remove 1,668,670 + -1.2 1,668,717 + -2.2 1,668,720 - -1.5 1,668,722 + -2.2 1,668,730 - -3.1 1,668,762 + +0.0 1,668,770 - +0.3 1,668,806 - +0.5 1,668,842 - -0.7 1,668,850 - -0.3 1,668,940 + -0.4 1,668,966 + +0.9 1,668,987 + -0.6 1,669,036 + +0.9 1,669,088 - +1.6 1,669,113 + -0.1 1,669,128 + +0.4 1,669,130 + +0.9 1,669,130 + +0.7 1,669,130 + +1.4 1,669,169 - -0.9 1,669,282 - PGA1_c16090 0.22 +1.1 1,669,310 - PGA1_c16090 0.25 +0.5 1,669,380 - PGA1_c16090 0.33 +0.4 1,669,402 - PGA1_c16090 0.36 -0.4 1,669,412 - PGA1_c16090 0.37 +2.1 1,669,453 - PGA1_c16090 0.42 +0.9 1,669,496 - PGA1_c16090 0.47 +0.6 1,669,517 - PGA1_c16090 0.49 +0.5 1,669,547 - PGA1_c16090 0.53 +0.7 1,669,580 + PGA1_c16090 0.57 +1.9 1,669,661 - PGA1_c16090 0.66 -2.0 1,669,719 + PGA1_c16090 0.73 -0.1 1,669,802 - PGA1_c16090 0.82 +0.6 1,669,812 - PGA1_c16090 0.83 -0.2 1,670,091 + +1.5 1,670,118 - +1.6 1,670,240 - PGA1_c16100 0.12 -0.6 1,670,272 + PGA1_c16100 0.14 +0.7 1,670,272 + PGA1_c16100 0.14 -1.1 1,670,280 - PGA1_c16100 0.15 +0.9 1,670,280 - PGA1_c16100 0.15 -1.6 1,670,280 - PGA1_c16100 0.15 -1.6 1,670,280 - PGA1_c16100 0.15 -1.1 1,670,305 + PGA1_c16100 0.17 +1.8 1,670,305 + PGA1_c16100 0.17 +1.9 1,670,313 - PGA1_c16100 0.17 +0.2 1,670,322 + PGA1_c16100 0.18 -0.8 1,670,411 - PGA1_c16100 0.24 -0.4 1,670,462 - PGA1_c16100 0.28 -0.1 1,670,473 - PGA1_c16100 0.28 -0.4 1,670,496 - PGA1_c16100 0.30 -0.1 1,670,546 - PGA1_c16100 0.34 -0.5 1,670,595 + PGA1_c16100 0.37 +1.3 1,670,595 + PGA1_c16100 0.37 +2.5 1,670,609 + PGA1_c16100 0.38 -0.6 1,670,626 + PGA1_c16100 0.39 +0.6 1,670,662 - PGA1_c16100 0.42 -0.9 1,670,673 + PGA1_c16100 0.43 +0.4 1,670,776 - PGA1_c16100 0.50 +0.5 1,670,781 - PGA1_c16100 0.50 +0.7 1,670,818 + PGA1_c16100 0.53 +0.6 1,670,932 + PGA1_c16100 0.61 -0.5 1,670,947 - PGA1_c16100 0.62 +0.9
Or see this region's nucleotide sequence