Experiment: m.b. Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c10780 and PGA1_c10790 are separated by 88 nucleotides PGA1_c10790 and PGA1_c10800 are separated by 232 nucleotides PGA1_c10800 and PGA1_c10810 are separated by 124 nucleotides
PGA1_c10780: PGA1_c10780 - putative short chain dehydrogenase, at 1,114,029 to 1,114,682
_c10780
PGA1_c10790: PGA1_c10790 - Type IV pilus biogenesis., at 1,114,771 to 1,115,040
_c10790
PGA1_c10800: PGA1_c10800 - Uncharacterized protein conserved in bacteria (DUF2199)., at 1,115,273 to 1,115,815
_c10800
PGA1_c10810: PGA1_c10810 - amidophosphoribosyltransferase PurF, at 1,115,940 to 1,117,406
_c10810
Position (kb)
1114
1115
1116 Strain fitness (log2 ratio)
-2
-1
0
1 at 1113.810 kb on + strand at 1113.868 kb on + strand at 1113.883 kb on + strand at 1113.905 kb on + strand at 1113.913 kb on - strand at 1113.954 kb on + strand at 1113.957 kb on - strand at 1114.720 kb on - strand at 1114.720 kb on - strand at 1114.720 kb on - strand at 1114.720 kb on - strand at 1114.728 kb on - strand at 1114.819 kb on + strand, within PGA1_c10790 at 1114.853 kb on + strand, within PGA1_c10790 at 1114.861 kb on - strand, within PGA1_c10790 at 1114.876 kb on + strand, within PGA1_c10790 at 1114.990 kb on + strand, within PGA1_c10790 at 1114.998 kb on - strand, within PGA1_c10790 at 1115.120 kb on - strand at 1115.181 kb on + strand at 1115.181 kb on + strand at 1115.181 kb on + strand at 1115.201 kb on + strand at 1115.219 kb on - strand at 1115.267 kb on - strand at 1115.279 kb on - strand at 1115.321 kb on - strand at 1115.349 kb on + strand, within PGA1_c10800 at 1115.391 kb on - strand, within PGA1_c10800 at 1115.444 kb on - strand, within PGA1_c10800 at 1115.503 kb on - strand, within PGA1_c10800 at 1115.587 kb on + strand, within PGA1_c10800 at 1115.595 kb on - strand, within PGA1_c10800 at 1115.708 kb on - strand, within PGA1_c10800 at 1115.734 kb on + strand, within PGA1_c10800 at 1115.787 kb on - strand at 1115.845 kb on - strand at 1115.862 kb on - strand at 1115.900 kb on + strand at 1115.932 kb on - strand at 1115.932 kb on - strand at 1115.937 kb on + strand at 1115.961 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.002 mg/ml remove 1,113,810 + +0.7 1,113,868 + +0.1 1,113,883 + -1.4 1,113,905 + -1.2 1,113,913 - -1.4 1,113,954 + +0.6 1,113,957 - -0.8 1,114,720 - +0.2 1,114,720 - +1.5 1,114,720 - +1.6 1,114,720 - -1.1 1,114,728 - -0.7 1,114,819 + PGA1_c10790 0.18 -0.2 1,114,853 + PGA1_c10790 0.30 -1.4 1,114,861 - PGA1_c10790 0.33 -1.8 1,114,876 + PGA1_c10790 0.39 -0.7 1,114,990 + PGA1_c10790 0.81 -1.5 1,114,998 - PGA1_c10790 0.84 -1.1 1,115,120 - +0.3 1,115,181 + -0.6 1,115,181 + +0.5 1,115,181 + +0.9 1,115,201 + +0.1 1,115,219 - +0.3 1,115,267 - -1.9 1,115,279 - -0.2 1,115,321 - -1.8 1,115,349 + PGA1_c10800 0.14 -0.5 1,115,391 - PGA1_c10800 0.22 -1.2 1,115,444 - PGA1_c10800 0.31 -0.4 1,115,503 - PGA1_c10800 0.42 -1.4 1,115,587 + PGA1_c10800 0.58 +0.2 1,115,595 - PGA1_c10800 0.59 +0.2 1,115,708 - PGA1_c10800 0.80 -0.4 1,115,734 + PGA1_c10800 0.85 +0.2 1,115,787 - +0.1 1,115,845 - +0.5 1,115,862 - +0.3 1,115,900 + -0.9 1,115,932 - +1.3 1,115,932 - -0.9 1,115,937 + -0.3 1,115,961 - +0.6
Or see this region's nucleotide sequence