Experiment: m.b. Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c01010 and PGA1_c01020 are separated by 33 nucleotides PGA1_c01020 and PGA1_c01030 are separated by 99 nucleotides PGA1_c01030 and PGA1_c01040 are separated by 59 nucleotides
PGA1_c01010: PGA1_c01010 - guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase SpoT, at 94,762 to 96,894
_c01010
PGA1_c01020: PGA1_c01020 - Uncharacterized protein conserved in bacteria, at 96,928 to 97,581
_c01020
PGA1_c01030: PGA1_c01030 - pyridoxine 5'-phosphate synthase PdxJ, at 97,681 to 98,442
_c01030
PGA1_c01040: PGA1_c01040 - holo-[acyl-carrier-protein] synthase AcpS, at 98,502 to 98,933
_c01040
Position (kb) 96
97
98 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 95.940 kb on + strand, within PGA1_c01010 at 95.950 kb on - strand, within PGA1_c01010 at 95.951 kb on - strand, within PGA1_c01010 at 95.961 kb on + strand, within PGA1_c01010 at 95.961 kb on + strand, within PGA1_c01010 at 95.961 kb on + strand, within PGA1_c01010 at 95.961 kb on + strand, within PGA1_c01010 at 95.969 kb on - strand, within PGA1_c01010 at 95.969 kb on - strand, within PGA1_c01010 at 95.969 kb on - strand, within PGA1_c01010 at 95.969 kb on - strand, within PGA1_c01010 at 95.969 kb on - strand, within PGA1_c01010 at 95.977 kb on - strand, within PGA1_c01010 at 95.991 kb on - strand, within PGA1_c01010 at 95.998 kb on + strand, within PGA1_c01010 at 95.998 kb on + strand, within PGA1_c01010 at 96.021 kb on - strand, within PGA1_c01010 at 96.031 kb on - strand, within PGA1_c01010 at 96.067 kb on + strand, within PGA1_c01010 at 96.075 kb on - strand, within PGA1_c01010 at 96.075 kb on - strand, within PGA1_c01010 at 96.131 kb on + strand, within PGA1_c01010 at 96.159 kb on - strand, within PGA1_c01010 at 96.262 kb on + strand, within PGA1_c01010 at 96.296 kb on + strand, within PGA1_c01010 at 96.298 kb on + strand, within PGA1_c01010 at 96.298 kb on + strand, within PGA1_c01010 at 96.298 kb on + strand, within PGA1_c01010 at 96.304 kb on - strand, within PGA1_c01010 at 96.304 kb on - strand, within PGA1_c01010 at 96.306 kb on - strand, within PGA1_c01010 at 96.380 kb on + strand, within PGA1_c01010 at 96.388 kb on - strand, within PGA1_c01010 at 96.388 kb on - strand, within PGA1_c01010 at 96.388 kb on - strand, within PGA1_c01010 at 96.412 kb on + strand, within PGA1_c01010 at 96.412 kb on - strand, within PGA1_c01010 at 96.430 kb on + strand, within PGA1_c01010 at 96.448 kb on + strand, within PGA1_c01010 at 96.456 kb on - strand, within PGA1_c01010 at 96.456 kb on - strand, within PGA1_c01010 at 96.515 kb on + strand, within PGA1_c01010 at 96.535 kb on - strand, within PGA1_c01010 at 96.535 kb on - strand, within PGA1_c01010 at 96.567 kb on + strand, within PGA1_c01010 at 96.567 kb on + strand, within PGA1_c01010 at 96.600 kb on + strand, within PGA1_c01010 at 96.618 kb on - strand, within PGA1_c01010 at 96.628 kb on + strand, within PGA1_c01010 at 96.635 kb on + strand, within PGA1_c01010 at 96.643 kb on - strand, within PGA1_c01010 at 96.673 kb on + strand, within PGA1_c01010 at 96.673 kb on + strand, within PGA1_c01010 at 96.673 kb on + strand, within PGA1_c01010 at 96.673 kb on + strand, within PGA1_c01010 at 96.673 kb on + strand, within PGA1_c01010 at 96.681 kb on - strand at 96.681 kb on - strand at 96.681 kb on - strand at 96.684 kb on + strand at 96.684 kb on + strand at 96.692 kb on - strand at 96.727 kb on - strand at 96.858 kb on - strand at 96.858 kb on - strand at 96.858 kb on - strand at 97.487 kb on + strand, within PGA1_c01020 at 97.559 kb on + strand at 97.575 kb on + strand at 97.621 kb on + strand at 97.621 kb on + strand at 97.629 kb on - strand at 97.631 kb on + strand at 97.642 kb on + strand at 98.481 kb on - strand at 98.488 kb on + strand at 98.491 kb on - strand at 98.496 kb on - strand at 98.496 kb on - strand at 98.496 kb on - strand at 98.498 kb on + strand at 98.505 kb on + strand at 98.513 kb on + strand at 98.554 kb on + strand, within PGA1_c01040
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.002 mg/ml remove 95,940 + PGA1_c01010 0.55 -3.2 95,950 - PGA1_c01010 0.56 -2.9 95,951 - PGA1_c01010 0.56 -1.4 95,961 + PGA1_c01010 0.56 -1.1 95,961 + PGA1_c01010 0.56 -1.9 95,961 + PGA1_c01010 0.56 -3.2 95,961 + PGA1_c01010 0.56 -2.8 95,969 - PGA1_c01010 0.57 -0.5 95,969 - PGA1_c01010 0.57 -2.8 95,969 - PGA1_c01010 0.57 -1.2 95,969 - PGA1_c01010 0.57 -2.6 95,969 - PGA1_c01010 0.57 +0.5 95,977 - PGA1_c01010 0.57 -3.3 95,991 - PGA1_c01010 0.58 +0.1 95,998 + PGA1_c01010 0.58 -2.1 95,998 + PGA1_c01010 0.58 -0.9 96,021 - PGA1_c01010 0.59 -1.6 96,031 - PGA1_c01010 0.59 -1.5 96,067 + PGA1_c01010 0.61 +0.3 96,075 - PGA1_c01010 0.62 -3.8 96,075 - PGA1_c01010 0.62 -0.5 96,131 + PGA1_c01010 0.64 -4.6 96,159 - PGA1_c01010 0.65 -3.2 96,262 + PGA1_c01010 0.70 -4.2 96,296 + PGA1_c01010 0.72 -2.9 96,298 + PGA1_c01010 0.72 -3.6 96,298 + PGA1_c01010 0.72 -1.4 96,298 + PGA1_c01010 0.72 -0.5 96,304 - PGA1_c01010 0.72 -2.7 96,304 - PGA1_c01010 0.72 -1.2 96,306 - PGA1_c01010 0.72 -3.7 96,380 + PGA1_c01010 0.76 -2.4 96,388 - PGA1_c01010 0.76 -1.2 96,388 - PGA1_c01010 0.76 -3.1 96,388 - PGA1_c01010 0.76 -1.7 96,412 + PGA1_c01010 0.77 -2.4 96,412 - PGA1_c01010 0.77 -1.6 96,430 + PGA1_c01010 0.78 -2.2 96,448 + PGA1_c01010 0.79 -2.2 96,456 - PGA1_c01010 0.79 -2.9 96,456 - PGA1_c01010 0.79 -3.3 96,515 + PGA1_c01010 0.82 -0.7 96,535 - PGA1_c01010 0.83 -2.2 96,535 - PGA1_c01010 0.83 -2.2 96,567 + PGA1_c01010 0.85 -2.4 96,567 + PGA1_c01010 0.85 -1.2 96,600 + PGA1_c01010 0.86 -3.3 96,618 - PGA1_c01010 0.87 -1.9 96,628 + PGA1_c01010 0.87 -2.7 96,635 + PGA1_c01010 0.88 +0.5 96,643 - PGA1_c01010 0.88 -1.7 96,673 + PGA1_c01010 0.90 -0.4 96,673 + PGA1_c01010 0.90 -0.5 96,673 + PGA1_c01010 0.90 -2.3 96,673 + PGA1_c01010 0.90 -0.9 96,673 + PGA1_c01010 0.90 -1.2 96,681 - -2.1 96,681 - -0.8 96,681 - -0.9 96,684 + +0.1 96,684 + -0.6 96,692 - -3.4 96,727 - -3.9 96,858 - -0.9 96,858 - -0.5 96,858 - -3.4 97,487 + PGA1_c01020 0.85 -2.4 97,559 + +0.7 97,575 + -0.5 97,621 + +0.3 97,621 + -0.4 97,629 - -0.4 97,631 + +0.1 97,642 + +0.3 98,481 - +0.6 98,488 + -1.8 98,491 - -0.7 98,496 - -0.8 98,496 - -1.2 98,496 - -0.3 98,498 + +0.1 98,505 + +2.2 98,513 + +0.7 98,554 + PGA1_c01040 0.12 +1.3
Or see this region's nucleotide sequence