Strain Fitness in Marinobacter adhaerens HP15 around HP15_3966

Experiment: m.b. Cobalt chloride 0.32 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3964 and HP15_3965 are separated by 9 nucleotidesHP15_3965 and HP15_3966 are separated by 1 nucleotidesHP15_3966 and HP15_3967 are separated by 93 nucleotides HP15_3964: HP15_3964 - glycosyl transferase, family 39, at 4,193,001 to 4,194,749 _3964 HP15_3965: HP15_3965 - membrane protein containing SNARE associated Golgi protein domain, at 4,194,759 to 4,195,427 _3965 HP15_3966: HP15_3966 - glycosyl transferase, group 2 family protein, at 4,195,429 to 4,196,196 _3966 HP15_3967: HP15_3967 - integral membrane sensor signal transduction histidine kinase, at 4,196,290 to 4,197,702 _3967 Position (kb) 4195 4196 4197Strain fitness (log2 ratio) -2 -1 0 1at 4194.439 kb on + strand, within HP15_3964at 4194.497 kb on - strand, within HP15_3964at 4194.535 kb on + strand, within HP15_3964at 4194.571 kb on - strand, within HP15_3964at 4194.701 kb on + strandat 4194.720 kb on - strandat 4194.745 kb on + strandat 4194.753 kb on - strandat 4194.756 kb on + strandat 4194.756 kb on + strandat 4195.039 kb on + strand, within HP15_3965at 4195.039 kb on - strand, within HP15_3965at 4195.105 kb on - strand, within HP15_3965at 4195.112 kb on - strand, within HP15_3965at 4195.283 kb on + strand, within HP15_3965at 4195.298 kb on + strand, within HP15_3965at 4195.346 kb on + strand, within HP15_3965at 4195.435 kb on - strandat 4195.470 kb on - strandat 4195.485 kb on - strandat 4195.485 kb on - strandat 4195.498 kb on + strandat 4195.554 kb on - strand, within HP15_3966at 4195.583 kb on - strand, within HP15_3966at 4195.861 kb on - strand, within HP15_3966at 4195.938 kb on - strand, within HP15_3966at 4195.961 kb on + strand, within HP15_3966at 4196.005 kb on - strand, within HP15_3966at 4196.017 kb on + strand, within HP15_3966at 4196.025 kb on - strand, within HP15_3966at 4196.090 kb on - strand, within HP15_3966at 4196.090 kb on - strand, within HP15_3966at 4196.117 kb on + strand, within HP15_3966at 4196.193 kb on - strandat 4196.346 kb on + strandat 4196.346 kb on + strandat 4196.346 kb on + strandat 4196.376 kb on + strandat 4196.413 kb on + strandat 4196.425 kb on + strandat 4196.515 kb on - strand, within HP15_3967at 4196.528 kb on + strand, within HP15_3967at 4196.536 kb on - strand, within HP15_3967at 4196.536 kb on - strand, within HP15_3967at 4196.552 kb on + strand, within HP15_3967at 4196.560 kb on - strand, within HP15_3967at 4196.580 kb on + strand, within HP15_3967at 4196.585 kb on + strand, within HP15_3967at 4196.590 kb on + strand, within HP15_3967at 4196.598 kb on - strand, within HP15_3967at 4196.640 kb on - strand, within HP15_3967at 4196.664 kb on + strand, within HP15_3967at 4196.731 kb on + strand, within HP15_3967at 4196.739 kb on - strand, within HP15_3967at 4196.865 kb on + strand, within HP15_3967at 4196.868 kb on - strand, within HP15_3967at 4196.917 kb on - strand, within HP15_3967at 4197.018 kb on - strand, within HP15_3967at 4197.044 kb on - strand, within HP15_3967at 4197.140 kb on + strand, within HP15_3967at 4197.140 kb on + strand, within HP15_3967at 4197.172 kb on + strand, within HP15_3967

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.32 mM
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4,194,439 + HP15_3964 0.82 -0.1
4,194,497 - HP15_3964 0.86 +0.5
4,194,535 + HP15_3964 0.88 -0.1
4,194,571 - HP15_3964 0.90 -0.1
4,194,701 + -0.7
4,194,720 - -0.2
4,194,745 + -0.3
4,194,753 - -0.9
4,194,756 + -0.2
4,194,756 + -0.5
4,195,039 + HP15_3965 0.42 +0.1
4,195,039 - HP15_3965 0.42 +0.4
4,195,105 - HP15_3965 0.52 -0.0
4,195,112 - HP15_3965 0.53 -0.6
4,195,283 + HP15_3965 0.78 +1.2
4,195,298 + HP15_3965 0.81 -0.5
4,195,346 + HP15_3965 0.88 -0.7
4,195,435 - -1.5
4,195,470 - -0.6
4,195,485 - -0.4
4,195,485 - -0.3
4,195,498 + -0.3
4,195,554 - HP15_3966 0.16 +0.2
4,195,583 - HP15_3966 0.20 +0.1
4,195,861 - HP15_3966 0.56 +0.3
4,195,938 - HP15_3966 0.66 -2.5
4,195,961 + HP15_3966 0.69 +0.2
4,196,005 - HP15_3966 0.75 -0.2
4,196,017 + HP15_3966 0.77 +0.7
4,196,025 - HP15_3966 0.78 +0.4
4,196,090 - HP15_3966 0.86 +0.2
4,196,090 - HP15_3966 0.86 -0.0
4,196,117 + HP15_3966 0.90 +0.5
4,196,193 - +0.4
4,196,346 + +0.1
4,196,346 + -0.6
4,196,346 + -0.2
4,196,376 + -0.5
4,196,413 + +0.3
4,196,425 + -1.6
4,196,515 - HP15_3967 0.16 +0.2
4,196,528 + HP15_3967 0.17 +0.2
4,196,536 - HP15_3967 0.17 -0.6
4,196,536 - HP15_3967 0.17 -1.1
4,196,552 + HP15_3967 0.19 +0.7
4,196,560 - HP15_3967 0.19 -1.4
4,196,580 + HP15_3967 0.21 +0.3
4,196,585 + HP15_3967 0.21 +0.4
4,196,590 + HP15_3967 0.21 +0.6
4,196,598 - HP15_3967 0.22 -0.1
4,196,640 - HP15_3967 0.25 +0.4
4,196,664 + HP15_3967 0.26 -0.2
4,196,731 + HP15_3967 0.31 -0.5
4,196,739 - HP15_3967 0.32 +1.1
4,196,865 + HP15_3967 0.41 +0.6
4,196,868 - HP15_3967 0.41 +0.5
4,196,917 - HP15_3967 0.44 +0.4
4,197,018 - HP15_3967 0.52 +0.1
4,197,044 - HP15_3967 0.53 +0.2
4,197,140 + HP15_3967 0.60 +0.1
4,197,140 + HP15_3967 0.60 +0.3
4,197,172 + HP15_3967 0.62 -0.2

Or see this region's nucleotide sequence