Experiment: m.b. Cobalt chloride 0.32 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3862 and HP15_3863 are separated by 159 nucleotides HP15_3863 and HP15_3864 are separated by 79 nucleotides
HP15_3862: HP15_3862 - pyridoxamine 5'-phosphate oxidase, at 4,087,101 to 4,087,811
_3862
HP15_3863: HP15_3863 - GGDEF domain protein, at 4,087,971 to 4,089,257
_3863
HP15_3864: HP15_3864 - secreted protein containing DUF748, at 4,089,337 to 4,092,162
_3864
Position (kb)
4087
4088
4089
4090 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4087.752 kb on - strand at 4087.752 kb on - strand at 4087.766 kb on + strand at 4087.886 kb on + strand at 4087.976 kb on - strand at 4087.981 kb on + strand at 4087.999 kb on - strand at 4088.122 kb on + strand, within HP15_3863 at 4088.130 kb on - strand, within HP15_3863 at 4088.198 kb on - strand, within HP15_3863 at 4088.225 kb on + strand, within HP15_3863 at 4088.247 kb on - strand, within HP15_3863 at 4088.247 kb on - strand, within HP15_3863 at 4088.252 kb on - strand, within HP15_3863 at 4088.285 kb on + strand, within HP15_3863 at 4088.293 kb on + strand, within HP15_3863 at 4088.301 kb on - strand, within HP15_3863 at 4088.303 kb on + strand, within HP15_3863 at 4088.325 kb on + strand, within HP15_3863 at 4088.359 kb on + strand, within HP15_3863 at 4088.428 kb on - strand, within HP15_3863 at 4088.483 kb on + strand, within HP15_3863 at 4088.487 kb on + strand, within HP15_3863 at 4088.625 kb on - strand, within HP15_3863 at 4088.918 kb on + strand, within HP15_3863 at 4089.066 kb on - strand, within HP15_3863 at 4089.066 kb on - strand, within HP15_3863 at 4089.076 kb on - strand, within HP15_3863 at 4089.149 kb on + strand at 4089.273 kb on - strand at 4089.346 kb on + strand at 4089.354 kb on - strand at 4089.421 kb on - strand at 4089.421 kb on - strand at 4089.467 kb on - strand at 4089.467 kb on - strand at 4089.491 kb on - strand at 4089.547 kb on + strand at 4089.651 kb on - strand, within HP15_3864 at 4089.902 kb on + strand, within HP15_3864 at 4089.902 kb on + strand, within HP15_3864 at 4089.902 kb on + strand, within HP15_3864 at 4089.902 kb on + strand, within HP15_3864 at 4089.910 kb on - strand, within HP15_3864 at 4089.910 kb on - strand, within HP15_3864 at 4089.910 kb on - strand, within HP15_3864 at 4089.910 kb on - strand, within HP15_3864 at 4089.910 kb on - strand, within HP15_3864 at 4089.910 kb on - strand, within HP15_3864 at 4089.940 kb on + strand, within HP15_3864 at 4090.061 kb on + strand, within HP15_3864 at 4090.069 kb on - strand, within HP15_3864 at 4090.118 kb on + strand, within HP15_3864 at 4090.131 kb on - strand, within HP15_3864
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.32 mM remove 4,087,752 - -1.6 4,087,752 - -0.2 4,087,766 + +2.1 4,087,886 + -0.3 4,087,976 - -0.2 4,087,981 + -0.4 4,087,999 - +0.8 4,088,122 + HP15_3863 0.12 -1.5 4,088,130 - HP15_3863 0.12 -0.1 4,088,198 - HP15_3863 0.18 -1.9 4,088,225 + HP15_3863 0.20 -0.6 4,088,247 - HP15_3863 0.21 -1.7 4,088,247 - HP15_3863 0.21 -0.2 4,088,252 - HP15_3863 0.22 -0.3 4,088,285 + HP15_3863 0.24 +1.4 4,088,293 + HP15_3863 0.25 -0.2 4,088,301 - HP15_3863 0.26 -0.0 4,088,303 + HP15_3863 0.26 +0.1 4,088,325 + HP15_3863 0.28 +0.4 4,088,359 + HP15_3863 0.30 -0.2 4,088,428 - HP15_3863 0.36 -0.1 4,088,483 + HP15_3863 0.40 +0.4 4,088,487 + HP15_3863 0.40 -0.6 4,088,625 - HP15_3863 0.51 -1.1 4,088,918 + HP15_3863 0.74 +2.1 4,089,066 - HP15_3863 0.85 +0.2 4,089,066 - HP15_3863 0.85 -0.8 4,089,076 - HP15_3863 0.86 +0.7 4,089,149 + -0.2 4,089,273 - +0.7 4,089,346 + -0.8 4,089,354 - -0.8 4,089,421 - -0.0 4,089,421 - -0.1 4,089,467 - +0.4 4,089,467 - -0.7 4,089,491 - -0.8 4,089,547 + -0.4 4,089,651 - HP15_3864 0.11 -0.9 4,089,902 + HP15_3864 0.20 -0.3 4,089,902 + HP15_3864 0.20 +0.4 4,089,902 + HP15_3864 0.20 +0.4 4,089,902 + HP15_3864 0.20 +0.3 4,089,910 - HP15_3864 0.20 -0.5 4,089,910 - HP15_3864 0.20 +0.1 4,089,910 - HP15_3864 0.20 +0.4 4,089,910 - HP15_3864 0.20 -0.3 4,089,910 - HP15_3864 0.20 -0.4 4,089,910 - HP15_3864 0.20 -0.3 4,089,940 + HP15_3864 0.21 -0.2 4,090,061 + HP15_3864 0.26 +1.9 4,090,069 - HP15_3864 0.26 -0.5 4,090,118 + HP15_3864 0.28 +1.1 4,090,131 - HP15_3864 0.28 +0.3
Or see this region's nucleotide sequence