Strain Fitness in Marinobacter adhaerens HP15 around HP15_3673

Experiment: m.b. Cobalt chloride 0.32 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3671 and HP15_3672 are separated by 2 nucleotidesHP15_3672 and HP15_3673 are separated by 206 nucleotidesHP15_3673 and HP15_3674 are separated by 151 nucleotides HP15_3671: HP15_3671 - sensory box/GGDEF family protein, at 3,868,565 to 3,870,502 _3671 HP15_3672: HP15_3672 - conserved hypothetical protein, secreted, at 3,870,505 to 3,871,014 _3672 HP15_3673: HP15_3673 - ferrichrome outer membrane transporter, at 3,871,221 to 3,873,329 _3673 HP15_3674: HP15_3674 - AraC-family transcriptional regulator, at 3,873,481 to 3,874,440 _3674 Position (kb) 3871 3872 3873 3874Strain fitness (log2 ratio) -3 -2 -1 0 1at 3870.231 kb on + strand, within HP15_3671at 3870.231 kb on + strand, within HP15_3671at 3870.239 kb on - strand, within HP15_3671at 3870.280 kb on - strand, within HP15_3671at 3870.280 kb on - strand, within HP15_3671at 3870.287 kb on - strand, within HP15_3671at 3870.374 kb on - strandat 3870.489 kb on + strandat 3870.489 kb on - strandat 3870.516 kb on - strandat 3870.567 kb on + strand, within HP15_3672at 3870.623 kb on + strand, within HP15_3672at 3870.623 kb on + strand, within HP15_3672at 3870.631 kb on - strand, within HP15_3672at 3870.631 kb on - strand, within HP15_3672at 3870.665 kb on + strand, within HP15_3672at 3870.842 kb on - strand, within HP15_3672at 3871.139 kb on + strandat 3871.153 kb on - strandat 3871.196 kb on - strandat 3871.289 kb on - strandat 3871.294 kb on + strandat 3871.302 kb on - strandat 3871.369 kb on + strandat 3871.377 kb on - strandat 3871.405 kb on + strandat 3871.466 kb on + strand, within HP15_3673at 3871.474 kb on - strand, within HP15_3673at 3871.534 kb on + strand, within HP15_3673at 3871.629 kb on + strand, within HP15_3673at 3871.736 kb on + strand, within HP15_3673at 3871.741 kb on + strand, within HP15_3673at 3871.749 kb on - strand, within HP15_3673at 3871.793 kb on + strand, within HP15_3673at 3871.801 kb on - strand, within HP15_3673at 3871.838 kb on + strand, within HP15_3673at 3872.004 kb on - strand, within HP15_3673at 3872.054 kb on + strand, within HP15_3673at 3872.059 kb on + strand, within HP15_3673at 3872.183 kb on - strand, within HP15_3673at 3872.222 kb on + strand, within HP15_3673at 3872.222 kb on + strand, within HP15_3673at 3872.524 kb on - strand, within HP15_3673at 3872.550 kb on - strand, within HP15_3673at 3872.622 kb on + strand, within HP15_3673at 3872.792 kb on + strand, within HP15_3673at 3872.800 kb on - strand, within HP15_3673at 3872.813 kb on - strand, within HP15_3673at 3872.844 kb on + strand, within HP15_3673at 3872.889 kb on - strand, within HP15_3673at 3872.891 kb on + strand, within HP15_3673at 3872.913 kb on + strand, within HP15_3673at 3872.923 kb on - strand, within HP15_3673at 3872.983 kb on - strand, within HP15_3673at 3872.990 kb on + strand, within HP15_3673at 3873.069 kb on - strand, within HP15_3673at 3873.132 kb on + strandat 3873.193 kb on - strandat 3873.206 kb on - strandat 3873.217 kb on - strandat 3873.232 kb on - strandat 3873.285 kb on + strandat 3873.348 kb on - strandat 3873.389 kb on - strandat 3873.389 kb on - strandat 3873.521 kb on - strandat 3873.562 kb on + strandat 3873.567 kb on + strandat 3873.575 kb on - strandat 3873.588 kb on + strand, within HP15_3674at 3873.588 kb on + strand, within HP15_3674at 3873.705 kb on + strand, within HP15_3674at 3873.740 kb on - strand, within HP15_3674at 3873.853 kb on + strand, within HP15_3674at 3873.961 kb on - strand, within HP15_3674at 3873.962 kb on - strand, within HP15_3674at 3873.967 kb on + strand, within HP15_3674at 3874.003 kb on + strand, within HP15_3674at 3874.019 kb on - strand, within HP15_3674at 3874.032 kb on + strand, within HP15_3674at 3874.035 kb on - strand, within HP15_3674at 3874.088 kb on + strand, within HP15_3674at 3874.167 kb on + strand, within HP15_3674at 3874.175 kb on - strand, within HP15_3674at 3874.232 kb on - strand, within HP15_3674at 3874.318 kb on - strand, within HP15_3674

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.32 mM
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3,870,231 + HP15_3671 0.86 -0.1
3,870,231 + HP15_3671 0.86 -0.2
3,870,239 - HP15_3671 0.86 +0.5
3,870,280 - HP15_3671 0.88 +0.8
3,870,280 - HP15_3671 0.88 +0.1
3,870,287 - HP15_3671 0.89 +0.1
3,870,374 - +1.2
3,870,489 + -0.2
3,870,489 - +0.5
3,870,516 - -0.7
3,870,567 + HP15_3672 0.12 -0.3
3,870,623 + HP15_3672 0.23 -1.1
3,870,623 + HP15_3672 0.23 -0.6
3,870,631 - HP15_3672 0.25 -0.1
3,870,631 - HP15_3672 0.25 +0.3
3,870,665 + HP15_3672 0.31 +0.2
3,870,842 - HP15_3672 0.66 +0.5
3,871,139 + +0.5
3,871,153 - +0.4
3,871,196 - -0.1
3,871,289 - -0.1
3,871,294 + -0.3
3,871,302 - +0.6
3,871,369 + +0.6
3,871,377 - +0.3
3,871,405 + -0.8
3,871,466 + HP15_3673 0.12 -0.7
3,871,474 - HP15_3673 0.12 -3.1
3,871,534 + HP15_3673 0.15 -0.4
3,871,629 + HP15_3673 0.19 -0.5
3,871,736 + HP15_3673 0.24 +1.2
3,871,741 + HP15_3673 0.25 +0.5
3,871,749 - HP15_3673 0.25 -0.3
3,871,793 + HP15_3673 0.27 +0.4
3,871,801 - HP15_3673 0.28 -0.5
3,871,838 + HP15_3673 0.29 +0.3
3,872,004 - HP15_3673 0.37 +0.2
3,872,054 + HP15_3673 0.39 +1.0
3,872,059 + HP15_3673 0.40 -0.3
3,872,183 - HP15_3673 0.46 +0.2
3,872,222 + HP15_3673 0.47 -0.6
3,872,222 + HP15_3673 0.47 -0.2
3,872,524 - HP15_3673 0.62 -0.3
3,872,550 - HP15_3673 0.63 -0.0
3,872,622 + HP15_3673 0.66 -0.1
3,872,792 + HP15_3673 0.74 -0.5
3,872,800 - HP15_3673 0.75 +0.3
3,872,813 - HP15_3673 0.75 -1.8
3,872,844 + HP15_3673 0.77 -0.3
3,872,889 - HP15_3673 0.79 -0.5
3,872,891 + HP15_3673 0.79 +0.6
3,872,913 + HP15_3673 0.80 +0.5
3,872,923 - HP15_3673 0.81 +0.9
3,872,983 - HP15_3673 0.84 +0.3
3,872,990 + HP15_3673 0.84 -0.8
3,873,069 - HP15_3673 0.88 +0.3
3,873,132 + -0.3
3,873,193 - +1.5
3,873,206 - +0.2
3,873,217 - -2.9
3,873,232 - -0.1
3,873,285 + -0.1
3,873,348 - +0.5
3,873,389 - +0.7
3,873,389 - +0.2
3,873,521 - +0.3
3,873,562 + +1.3
3,873,567 + +0.5
3,873,575 - +1.5
3,873,588 + HP15_3674 0.11 +0.6
3,873,588 + HP15_3674 0.11 -0.8
3,873,705 + HP15_3674 0.23 +0.0
3,873,740 - HP15_3674 0.27 -0.7
3,873,853 + HP15_3674 0.39 -2.2
3,873,961 - HP15_3674 0.50 -0.9
3,873,962 - HP15_3674 0.50 -0.8
3,873,967 + HP15_3674 0.51 -0.4
3,874,003 + HP15_3674 0.54 +0.5
3,874,019 - HP15_3674 0.56 +0.8
3,874,032 + HP15_3674 0.57 -0.8
3,874,035 - HP15_3674 0.58 -0.0
3,874,088 + HP15_3674 0.63 -0.3
3,874,167 + HP15_3674 0.71 -0.8
3,874,175 - HP15_3674 0.72 -0.2
3,874,232 - HP15_3674 0.78 -0.9
3,874,318 - HP15_3674 0.87 +1.3

Or see this region's nucleotide sequence