Experiment: m.b. Cobalt chloride 0.32 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3671 and HP15_3672 are separated by 2 nucleotides HP15_3672 and HP15_3673 are separated by 206 nucleotides HP15_3673 and HP15_3674 are separated by 151 nucleotides
HP15_3671: HP15_3671 - sensory box/GGDEF family protein, at 3,868,565 to 3,870,502
_3671
HP15_3672: HP15_3672 - conserved hypothetical protein, secreted, at 3,870,505 to 3,871,014
_3672
HP15_3673: HP15_3673 - ferrichrome outer membrane transporter, at 3,871,221 to 3,873,329
_3673
HP15_3674: HP15_3674 - AraC-family transcriptional regulator, at 3,873,481 to 3,874,440
_3674
Position (kb)
3871
3872
3873
3874 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3870.231 kb on + strand, within HP15_3671 at 3870.231 kb on + strand, within HP15_3671 at 3870.239 kb on - strand, within HP15_3671 at 3870.280 kb on - strand, within HP15_3671 at 3870.280 kb on - strand, within HP15_3671 at 3870.287 kb on - strand, within HP15_3671 at 3870.374 kb on - strand at 3870.489 kb on + strand at 3870.489 kb on - strand at 3870.516 kb on - strand at 3870.567 kb on + strand, within HP15_3672 at 3870.623 kb on + strand, within HP15_3672 at 3870.623 kb on + strand, within HP15_3672 at 3870.631 kb on - strand, within HP15_3672 at 3870.631 kb on - strand, within HP15_3672 at 3870.665 kb on + strand, within HP15_3672 at 3870.842 kb on - strand, within HP15_3672 at 3871.139 kb on + strand at 3871.153 kb on - strand at 3871.196 kb on - strand at 3871.289 kb on - strand at 3871.294 kb on + strand at 3871.302 kb on - strand at 3871.369 kb on + strand at 3871.377 kb on - strand at 3871.405 kb on + strand at 3871.466 kb on + strand, within HP15_3673 at 3871.474 kb on - strand, within HP15_3673 at 3871.534 kb on + strand, within HP15_3673 at 3871.629 kb on + strand, within HP15_3673 at 3871.736 kb on + strand, within HP15_3673 at 3871.741 kb on + strand, within HP15_3673 at 3871.749 kb on - strand, within HP15_3673 at 3871.793 kb on + strand, within HP15_3673 at 3871.801 kb on - strand, within HP15_3673 at 3871.838 kb on + strand, within HP15_3673 at 3872.004 kb on - strand, within HP15_3673 at 3872.054 kb on + strand, within HP15_3673 at 3872.059 kb on + strand, within HP15_3673 at 3872.183 kb on - strand, within HP15_3673 at 3872.222 kb on + strand, within HP15_3673 at 3872.222 kb on + strand, within HP15_3673 at 3872.524 kb on - strand, within HP15_3673 at 3872.550 kb on - strand, within HP15_3673 at 3872.622 kb on + strand, within HP15_3673 at 3872.792 kb on + strand, within HP15_3673 at 3872.800 kb on - strand, within HP15_3673 at 3872.813 kb on - strand, within HP15_3673 at 3872.844 kb on + strand, within HP15_3673 at 3872.889 kb on - strand, within HP15_3673 at 3872.891 kb on + strand, within HP15_3673 at 3872.913 kb on + strand, within HP15_3673 at 3872.923 kb on - strand, within HP15_3673 at 3872.983 kb on - strand, within HP15_3673 at 3872.990 kb on + strand, within HP15_3673 at 3873.069 kb on - strand, within HP15_3673 at 3873.132 kb on + strand at 3873.193 kb on - strand at 3873.206 kb on - strand at 3873.217 kb on - strand at 3873.232 kb on - strand at 3873.285 kb on + strand at 3873.348 kb on - strand at 3873.389 kb on - strand at 3873.389 kb on - strand at 3873.521 kb on - strand at 3873.562 kb on + strand at 3873.567 kb on + strand at 3873.575 kb on - strand at 3873.588 kb on + strand, within HP15_3674 at 3873.588 kb on + strand, within HP15_3674 at 3873.705 kb on + strand, within HP15_3674 at 3873.740 kb on - strand, within HP15_3674 at 3873.853 kb on + strand, within HP15_3674 at 3873.961 kb on - strand, within HP15_3674 at 3873.962 kb on - strand, within HP15_3674 at 3873.967 kb on + strand, within HP15_3674 at 3874.003 kb on + strand, within HP15_3674 at 3874.019 kb on - strand, within HP15_3674 at 3874.032 kb on + strand, within HP15_3674 at 3874.035 kb on - strand, within HP15_3674 at 3874.088 kb on + strand, within HP15_3674 at 3874.167 kb on + strand, within HP15_3674 at 3874.175 kb on - strand, within HP15_3674 at 3874.232 kb on - strand, within HP15_3674 at 3874.318 kb on - strand, within HP15_3674
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.32 mM remove 3,870,231 + HP15_3671 0.86 -0.1 3,870,231 + HP15_3671 0.86 -0.2 3,870,239 - HP15_3671 0.86 +0.5 3,870,280 - HP15_3671 0.88 +0.8 3,870,280 - HP15_3671 0.88 +0.1 3,870,287 - HP15_3671 0.89 +0.1 3,870,374 - +1.2 3,870,489 + -0.2 3,870,489 - +0.5 3,870,516 - -0.7 3,870,567 + HP15_3672 0.12 -0.3 3,870,623 + HP15_3672 0.23 -1.1 3,870,623 + HP15_3672 0.23 -0.6 3,870,631 - HP15_3672 0.25 -0.1 3,870,631 - HP15_3672 0.25 +0.3 3,870,665 + HP15_3672 0.31 +0.2 3,870,842 - HP15_3672 0.66 +0.5 3,871,139 + +0.5 3,871,153 - +0.4 3,871,196 - -0.1 3,871,289 - -0.1 3,871,294 + -0.3 3,871,302 - +0.6 3,871,369 + +0.6 3,871,377 - +0.3 3,871,405 + -0.8 3,871,466 + HP15_3673 0.12 -0.7 3,871,474 - HP15_3673 0.12 -3.1 3,871,534 + HP15_3673 0.15 -0.4 3,871,629 + HP15_3673 0.19 -0.5 3,871,736 + HP15_3673 0.24 +1.2 3,871,741 + HP15_3673 0.25 +0.5 3,871,749 - HP15_3673 0.25 -0.3 3,871,793 + HP15_3673 0.27 +0.4 3,871,801 - HP15_3673 0.28 -0.5 3,871,838 + HP15_3673 0.29 +0.3 3,872,004 - HP15_3673 0.37 +0.2 3,872,054 + HP15_3673 0.39 +1.0 3,872,059 + HP15_3673 0.40 -0.3 3,872,183 - HP15_3673 0.46 +0.2 3,872,222 + HP15_3673 0.47 -0.6 3,872,222 + HP15_3673 0.47 -0.2 3,872,524 - HP15_3673 0.62 -0.3 3,872,550 - HP15_3673 0.63 -0.0 3,872,622 + HP15_3673 0.66 -0.1 3,872,792 + HP15_3673 0.74 -0.5 3,872,800 - HP15_3673 0.75 +0.3 3,872,813 - HP15_3673 0.75 -1.8 3,872,844 + HP15_3673 0.77 -0.3 3,872,889 - HP15_3673 0.79 -0.5 3,872,891 + HP15_3673 0.79 +0.6 3,872,913 + HP15_3673 0.80 +0.5 3,872,923 - HP15_3673 0.81 +0.9 3,872,983 - HP15_3673 0.84 +0.3 3,872,990 + HP15_3673 0.84 -0.8 3,873,069 - HP15_3673 0.88 +0.3 3,873,132 + -0.3 3,873,193 - +1.5 3,873,206 - +0.2 3,873,217 - -2.9 3,873,232 - -0.1 3,873,285 + -0.1 3,873,348 - +0.5 3,873,389 - +0.7 3,873,389 - +0.2 3,873,521 - +0.3 3,873,562 + +1.3 3,873,567 + +0.5 3,873,575 - +1.5 3,873,588 + HP15_3674 0.11 +0.6 3,873,588 + HP15_3674 0.11 -0.8 3,873,705 + HP15_3674 0.23 +0.0 3,873,740 - HP15_3674 0.27 -0.7 3,873,853 + HP15_3674 0.39 -2.2 3,873,961 - HP15_3674 0.50 -0.9 3,873,962 - HP15_3674 0.50 -0.8 3,873,967 + HP15_3674 0.51 -0.4 3,874,003 + HP15_3674 0.54 +0.5 3,874,019 - HP15_3674 0.56 +0.8 3,874,032 + HP15_3674 0.57 -0.8 3,874,035 - HP15_3674 0.58 -0.0 3,874,088 + HP15_3674 0.63 -0.3 3,874,167 + HP15_3674 0.71 -0.8 3,874,175 - HP15_3674 0.72 -0.2 3,874,232 - HP15_3674 0.78 -0.9 3,874,318 - HP15_3674 0.87 +1.3
Or see this region's nucleotide sequence