Experiment: m.b. Polymyxin B sulfate 0.0008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c07650 and PGA1_c07660 are separated by 378 nucleotides PGA1_c07660 and PGA1_c07670 are separated by 438 nucleotides PGA1_c07670 and PGA1_c07680 are separated by 168 nucleotides PGA1_c07680 and PGA1_c07690 are separated by 54 nucleotides
PGA1_c07650: PGA1_c07650 - hypothetical protein, at 793,009 to 793,998
_c07650
PGA1_c07660: PGA1_c07660 - tRNA-Thr, at 794,377 to 794,452
_c07660
PGA1_c07670: PGA1_c07670 - two component regulatory sytem, at 794,891 to 796,633
_c07670
PGA1_c07680: PGA1_c07680 - N-acyl-L-homoserine lactone synthetase, at 796,802 to 797,410
_c07680
PGA1_c07690: PGA1_c07690 - (S)-mandelate dehydrogenase MdlB, at 797,465 to 798,556
_c07690
Position (kb) 794
795
796
797 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 793.911 kb on + strand at 793.923 kb on - strand at 793.952 kb on + strand at 793.952 kb on + strand at 794.023 kb on - strand at 794.037 kb on - strand at 794.042 kb on - strand at 794.051 kb on + strand at 794.056 kb on + strand at 794.056 kb on + strand at 794.056 kb on + strand at 794.095 kb on + strand at 794.113 kb on + strand at 794.121 kb on - strand at 794.149 kb on + strand at 794.149 kb on + strand at 794.149 kb on + strand at 794.149 kb on + strand at 794.149 kb on + strand at 794.149 kb on + strand at 794.157 kb on - strand at 794.157 kb on - strand at 794.157 kb on - strand at 794.157 kb on - strand at 794.157 kb on - strand at 794.157 kb on - strand at 794.157 kb on - strand at 794.157 kb on - strand at 794.157 kb on - strand at 794.252 kb on + strand at 794.253 kb on + strand at 794.552 kb on - strand at 794.568 kb on + strand at 794.638 kb on + strand at 794.638 kb on + strand at 794.638 kb on + strand at 794.638 kb on + strand at 794.638 kb on + strand at 794.646 kb on - strand at 794.652 kb on + strand at 794.662 kb on + strand at 794.665 kb on + strand at 794.695 kb on - strand at 794.731 kb on + strand at 794.752 kb on + strand at 794.760 kb on - strand at 794.804 kb on + strand at 794.804 kb on + strand at 794.835 kb on + strand at 794.835 kb on + strand at 794.835 kb on + strand at 794.835 kb on + strand at 794.835 kb on + strand at 794.835 kb on + strand at 794.835 kb on + strand at 794.835 kb on + strand at 794.843 kb on - strand at 794.843 kb on - strand at 794.843 kb on - strand at 794.843 kb on - strand at 794.843 kb on - strand at 794.843 kb on - strand at 794.843 kb on - strand at 794.857 kb on + strand at 794.857 kb on + strand at 794.865 kb on - strand at 794.865 kb on - strand at 794.865 kb on - strand at 794.865 kb on - strand at 794.865 kb on - strand at 794.954 kb on - strand at 794.954 kb on - strand at 794.955 kb on + strand at 794.960 kb on + strand at 794.968 kb on - strand at 794.982 kb on + strand at 794.988 kb on + strand at 794.992 kb on + strand at 794.995 kb on - strand at 794.996 kb on - strand at 794.996 kb on - strand at 794.996 kb on - strand at 795.028 kb on + strand at 795.028 kb on + strand at 795.069 kb on - strand, within PGA1_c07670 at 795.099 kb on + strand, within PGA1_c07670 at 795.105 kb on - strand, within PGA1_c07670 at 795.105 kb on - strand, within PGA1_c07670 at 795.133 kb on - strand, within PGA1_c07670 at 795.196 kb on + strand, within PGA1_c07670 at 795.205 kb on - strand, within PGA1_c07670 at 795.314 kb on - strand, within PGA1_c07670 at 795.314 kb on - strand, within PGA1_c07670 at 795.325 kb on + strand, within PGA1_c07670 at 795.346 kb on + strand, within PGA1_c07670 at 795.416 kb on + strand, within PGA1_c07670 at 795.421 kb on + strand, within PGA1_c07670 at 795.439 kb on - strand, within PGA1_c07670 at 795.447 kb on - strand, within PGA1_c07670 at 795.561 kb on + strand, within PGA1_c07670 at 795.570 kb on - strand, within PGA1_c07670 at 795.600 kb on + strand, within PGA1_c07670 at 795.602 kb on - strand, within PGA1_c07670 at 795.633 kb on + strand, within PGA1_c07670 at 795.682 kb on + strand, within PGA1_c07670 at 795.717 kb on + strand, within PGA1_c07670 at 795.805 kb on + strand, within PGA1_c07670 at 795.805 kb on + strand, within PGA1_c07670 at 795.805 kb on + strand, within PGA1_c07670 at 795.815 kb on + strand, within PGA1_c07670 at 795.815 kb on + strand, within PGA1_c07670 at 795.815 kb on + strand, within PGA1_c07670 at 795.823 kb on - strand, within PGA1_c07670 at 795.823 kb on - strand, within PGA1_c07670 at 795.823 kb on - strand, within PGA1_c07670 at 795.823 kb on - strand, within PGA1_c07670 at 795.874 kb on + strand, within PGA1_c07670 at 795.874 kb on + strand, within PGA1_c07670 at 795.907 kb on + strand, within PGA1_c07670 at 795.907 kb on + strand, within PGA1_c07670 at 795.907 kb on + strand, within PGA1_c07670 at 795.973 kb on - strand, within PGA1_c07670 at 795.977 kb on + strand, within PGA1_c07670 at 795.990 kb on + strand, within PGA1_c07670 at 795.990 kb on + strand, within PGA1_c07670 at 795.990 kb on + strand, within PGA1_c07670 at 795.990 kb on + strand, within PGA1_c07670 at 795.990 kb on + strand, within PGA1_c07670 at 795.990 kb on + strand, within PGA1_c07670 at 795.998 kb on - strand, within PGA1_c07670 at 795.998 kb on - strand, within PGA1_c07670 at 796.094 kb on - strand, within PGA1_c07670 at 796.188 kb on + strand, within PGA1_c07670 at 796.196 kb on - strand, within PGA1_c07670 at 796.196 kb on - strand, within PGA1_c07670 at 796.196 kb on - strand, within PGA1_c07670 at 796.196 kb on - strand, within PGA1_c07670 at 796.216 kb on + strand, within PGA1_c07670 at 796.232 kb on - strand, within PGA1_c07670 at 796.365 kb on + strand, within PGA1_c07670 at 796.365 kb on + strand, within PGA1_c07670 at 796.365 kb on + strand, within PGA1_c07670 at 796.373 kb on - strand, within PGA1_c07670 at 796.385 kb on + strand, within PGA1_c07670 at 796.442 kb on - strand, within PGA1_c07670 at 796.473 kb on - strand at 796.478 kb on + strand at 796.484 kb on + strand at 796.503 kb on - strand at 796.534 kb on + strand at 796.555 kb on + strand at 796.555 kb on + strand at 796.555 kb on + strand at 796.563 kb on - strand at 796.563 kb on - strand at 796.605 kb on + strand at 796.613 kb on - strand at 796.647 kb on + strand at 796.655 kb on - strand at 796.665 kb on - strand at 796.776 kb on + strand at 796.776 kb on + strand at 796.784 kb on - strand at 796.789 kb on + strand at 796.792 kb on - strand at 796.794 kb on + strand at 796.794 kb on + strand at 796.797 kb on - strand at 796.802 kb on - strand at 796.802 kb on - strand at 796.802 kb on - strand at 796.830 kb on + strand at 796.838 kb on - strand at 796.840 kb on + strand at 796.840 kb on + strand at 796.842 kb on + strand at 796.850 kb on - strand at 796.850 kb on - strand at 796.850 kb on - strand at 796.850 kb on - strand at 796.857 kb on - strand at 796.857 kb on - strand at 796.861 kb on + strand at 796.867 kb on - strand, within PGA1_c07680 at 796.884 kb on + strand, within PGA1_c07680 at 796.884 kb on - strand, within PGA1_c07680 at 796.910 kb on - strand, within PGA1_c07680 at 796.911 kb on + strand, within PGA1_c07680 at 796.911 kb on + strand, within PGA1_c07680 at 796.940 kb on - strand, within PGA1_c07680 at 796.950 kb on - strand, within PGA1_c07680 at 796.963 kb on + strand, within PGA1_c07680 at 796.971 kb on - strand, within PGA1_c07680 at 797.029 kb on + strand, within PGA1_c07680 at 797.029 kb on + strand, within PGA1_c07680 at 797.029 kb on + strand, within PGA1_c07680 at 797.029 kb on + strand, within PGA1_c07680 at 797.029 kb on + strand, within PGA1_c07680 at 797.029 kb on + strand, within PGA1_c07680 at 797.029 kb on + strand, within PGA1_c07680 at 797.029 kb on + strand, within PGA1_c07680 at 797.029 kb on + strand, within PGA1_c07680 at 797.029 kb on + strand, within PGA1_c07680 at 797.037 kb on - strand, within PGA1_c07680 at 797.037 kb on - strand, within PGA1_c07680 at 797.037 kb on - strand, within PGA1_c07680 at 797.037 kb on - strand, within PGA1_c07680 at 797.037 kb on - strand, within PGA1_c07680 at 797.043 kb on + strand, within PGA1_c07680 at 797.043 kb on + strand, within PGA1_c07680 at 797.043 kb on + strand, within PGA1_c07680 at 797.043 kb on + strand, within PGA1_c07680 at 797.043 kb on + strand, within PGA1_c07680 at 797.043 kb on + strand, within PGA1_c07680 at 797.043 kb on + strand, within PGA1_c07680 at 797.051 kb on - strand, within PGA1_c07680 at 797.051 kb on - strand, within PGA1_c07680 at 797.051 kb on - strand, within PGA1_c07680 at 797.071 kb on - strand, within PGA1_c07680 at 797.096 kb on + strand, within PGA1_c07680 at 797.096 kb on + strand, within PGA1_c07680 at 797.114 kb on + strand, within PGA1_c07680 at 797.119 kb on - strand, within PGA1_c07680 at 797.127 kb on - strand, within PGA1_c07680 at 797.154 kb on - strand, within PGA1_c07680 at 797.163 kb on + strand, within PGA1_c07680 at 797.163 kb on + strand, within PGA1_c07680 at 797.169 kb on + strand, within PGA1_c07680 at 797.169 kb on - strand, within PGA1_c07680 at 797.181 kb on + strand, within PGA1_c07680 at 797.181 kb on + strand, within PGA1_c07680 at 797.181 kb on + strand, within PGA1_c07680 at 797.196 kb on + strand, within PGA1_c07680 at 797.206 kb on - strand, within PGA1_c07680 at 797.206 kb on - strand, within PGA1_c07680 at 797.206 kb on - strand, within PGA1_c07680 at 797.215 kb on + strand, within PGA1_c07680 at 797.215 kb on + strand, within PGA1_c07680 at 797.215 kb on + strand, within PGA1_c07680 at 797.215 kb on + strand, within PGA1_c07680 at 797.215 kb on + strand, within PGA1_c07680 at 797.215 kb on + strand, within PGA1_c07680 at 797.215 kb on + strand, within PGA1_c07680 at 797.215 kb on + strand, within PGA1_c07680 at 797.215 kb on + strand, within PGA1_c07680 at 797.215 kb on + strand, within PGA1_c07680 at 797.219 kb on - strand, within PGA1_c07680 at 797.223 kb on - strand, within PGA1_c07680 at 797.223 kb on - strand, within PGA1_c07680 at 797.223 kb on - strand, within PGA1_c07680 at 797.274 kb on - strand, within PGA1_c07680 at 797.274 kb on - strand, within PGA1_c07680 at 797.292 kb on + strand, within PGA1_c07680 at 797.300 kb on - strand, within PGA1_c07680 at 797.321 kb on - strand, within PGA1_c07680 at 797.325 kb on + strand, within PGA1_c07680 at 797.333 kb on - strand, within PGA1_c07680 at 797.370 kb on - strand at 797.405 kb on + strand at 797.405 kb on + strand at 797.405 kb on + strand at 797.413 kb on - strand at 797.413 kb on - strand at 797.413 kb on - strand at 797.464 kb on + strand at 797.469 kb on - strand at 797.469 kb on - strand at 797.498 kb on - strand at 797.512 kb on + strand at 797.512 kb on + strand at 797.512 kb on + strand at 797.529 kb on + strand at 797.529 kb on + strand at 797.529 kb on + strand at 797.534 kb on + strand at 797.537 kb on - strand at 797.539 kb on - strand at 797.550 kb on + strand at 797.566 kb on - strand at 797.581 kb on + strand, within PGA1_c07690 at 797.605 kb on - strand, within PGA1_c07690 at 797.624 kb on - strand, within PGA1_c07690
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Polymyxin B sulfate 0.0008 mg/ml remove 793,911 + +0.8 793,923 - -0.6 793,952 + +0.9 793,952 + -0.6 794,023 - -1.5 794,037 - -0.8 794,042 - +0.5 794,051 + +0.7 794,056 + -0.2 794,056 + +1.0 794,056 + -0.1 794,095 + -1.8 794,113 + -1.2 794,121 - +0.8 794,149 + +1.5 794,149 + -0.1 794,149 + +1.2 794,149 + +0.2 794,149 + -0.3 794,149 + -0.7 794,157 - -0.1 794,157 - -0.9 794,157 - +0.5 794,157 - +1.1 794,157 - -1.2 794,157 - -0.5 794,157 - -0.2 794,157 - -1.1 794,157 - -0.5 794,252 + +0.7 794,253 + -0.1 794,552 - +0.1 794,568 + -0.5 794,638 + -2.6 794,638 + +1.0 794,638 + -0.6 794,638 + -1.8 794,638 + +0.7 794,646 - +0.1 794,652 + +0.3 794,662 + -1.1 794,665 + -0.3 794,695 - -0.3 794,731 + +1.1 794,752 + -0.7 794,760 - -0.3 794,804 + -1.9 794,804 + +0.7 794,835 + -0.1 794,835 + -2.5 794,835 + -0.9 794,835 + +1.0 794,835 + +0.5 794,835 + +0.9 794,835 + -0.9 794,835 + +1.5 794,843 - -0.8 794,843 - -0.5 794,843 - -0.3 794,843 - -2.3 794,843 - +0.0 794,843 - -2.3 794,843 - +0.1 794,857 + +1.5 794,857 + +0.0 794,865 - -0.0 794,865 - +1.3 794,865 - +0.2 794,865 - -1.8 794,865 - -0.2 794,954 - -0.1 794,954 - +0.3 794,955 + -1.2 794,960 + -1.4 794,968 - +0.2 794,982 + -0.5 794,988 + -1.1 794,992 + -0.1 794,995 - -0.8 794,996 - +1.1 794,996 - -1.1 794,996 - +0.2 795,028 + -1.6 795,028 + -0.3 795,069 - PGA1_c07670 0.10 +0.6 795,099 + PGA1_c07670 0.12 -0.2 795,105 - PGA1_c07670 0.12 -2.5 795,105 - PGA1_c07670 0.12 +0.3 795,133 - PGA1_c07670 0.14 -1.6 795,196 + PGA1_c07670 0.17 +1.3 795,205 - PGA1_c07670 0.18 -1.5 795,314 - PGA1_c07670 0.24 -1.4 795,314 - PGA1_c07670 0.24 -1.8 795,325 + PGA1_c07670 0.25 +0.5 795,346 + PGA1_c07670 0.26 -0.8 795,416 + PGA1_c07670 0.30 +0.8 795,421 + PGA1_c07670 0.30 +0.5 795,439 - PGA1_c07670 0.31 -2.6 795,447 - PGA1_c07670 0.32 -0.7 795,561 + PGA1_c07670 0.38 -0.6 795,570 - PGA1_c07670 0.39 -0.1 795,600 + PGA1_c07670 0.41 +1.0 795,602 - PGA1_c07670 0.41 +0.0 795,633 + PGA1_c07670 0.43 +0.5 795,682 + PGA1_c07670 0.45 -0.9 795,717 + PGA1_c07670 0.47 +0.4 795,805 + PGA1_c07670 0.52 -0.3 795,805 + PGA1_c07670 0.52 -0.5 795,805 + PGA1_c07670 0.52 -1.2 795,815 + PGA1_c07670 0.53 -1.3 795,815 + PGA1_c07670 0.53 -1.1 795,815 + PGA1_c07670 0.53 -1.1 795,823 - PGA1_c07670 0.53 -0.4 795,823 - PGA1_c07670 0.53 -1.1 795,823 - PGA1_c07670 0.53 +0.0 795,823 - PGA1_c07670 0.53 +1.1 795,874 + PGA1_c07670 0.56 +0.3 795,874 + PGA1_c07670 0.56 +0.9 795,907 + PGA1_c07670 0.58 -0.9 795,907 + PGA1_c07670 0.58 +0.6 795,907 + PGA1_c07670 0.58 -1.3 795,973 - PGA1_c07670 0.62 -0.6 795,977 + PGA1_c07670 0.62 +0.6 795,990 + PGA1_c07670 0.63 -0.5 795,990 + PGA1_c07670 0.63 +0.5 795,990 + PGA1_c07670 0.63 -0.2 795,990 + PGA1_c07670 0.63 -0.3 795,990 + PGA1_c07670 0.63 +0.0 795,990 + PGA1_c07670 0.63 +0.1 795,998 - PGA1_c07670 0.64 +0.8 795,998 - PGA1_c07670 0.64 -0.3 796,094 - PGA1_c07670 0.69 -2.8 796,188 + PGA1_c07670 0.74 -0.2 796,196 - PGA1_c07670 0.75 -1.0 796,196 - PGA1_c07670 0.75 -2.3 796,196 - PGA1_c07670 0.75 +0.3 796,196 - PGA1_c07670 0.75 +0.5 796,216 + PGA1_c07670 0.76 -0.3 796,232 - PGA1_c07670 0.77 -0.5 796,365 + PGA1_c07670 0.85 -2.6 796,365 + PGA1_c07670 0.85 -1.5 796,365 + PGA1_c07670 0.85 -0.9 796,373 - PGA1_c07670 0.85 +0.1 796,385 + PGA1_c07670 0.86 +0.0 796,442 - PGA1_c07670 0.89 -0.2 796,473 - +0.2 796,478 + -0.1 796,484 + -0.1 796,503 - -0.3 796,534 + -1.1 796,555 + +0.2 796,555 + +1.5 796,555 + -0.2 796,563 - -0.7 796,563 - +0.5 796,605 + +1.4 796,613 - +0.3 796,647 + +1.5 796,655 - -0.1 796,665 - -0.7 796,776 + -1.6 796,776 + -1.2 796,784 - +0.4 796,789 + +0.8 796,792 - +0.2 796,794 + -0.5 796,794 + +0.1 796,797 - +1.3 796,802 - +1.3 796,802 - +0.3 796,802 - -0.5 796,830 + -0.5 796,838 - -0.4 796,840 + +0.9 796,840 + +0.5 796,842 + -1.1 796,850 - -0.1 796,850 - -0.9 796,850 - +1.7 796,850 - -0.5 796,857 - +1.7 796,857 - +1.1 796,861 + -0.5 796,867 - PGA1_c07680 0.11 -1.6 796,884 + PGA1_c07680 0.13 -2.6 796,884 - PGA1_c07680 0.13 +3.1 796,910 - PGA1_c07680 0.18 -0.5 796,911 + PGA1_c07680 0.18 -0.5 796,911 + PGA1_c07680 0.18 +0.8 796,940 - PGA1_c07680 0.23 +0.5 796,950 - PGA1_c07680 0.24 -1.4 796,963 + PGA1_c07680 0.26 +0.1 796,971 - PGA1_c07680 0.28 +0.1 797,029 + PGA1_c07680 0.37 -1.8 797,029 + PGA1_c07680 0.37 +1.2 797,029 + PGA1_c07680 0.37 -0.2 797,029 + PGA1_c07680 0.37 +0.3 797,029 + PGA1_c07680 0.37 -0.1 797,029 + PGA1_c07680 0.37 +0.1 797,029 + PGA1_c07680 0.37 +0.2 797,029 + PGA1_c07680 0.37 -1.8 797,029 + PGA1_c07680 0.37 +0.1 797,029 + PGA1_c07680 0.37 +0.5 797,037 - PGA1_c07680 0.39 +1.1 797,037 - PGA1_c07680 0.39 +0.1 797,037 - PGA1_c07680 0.39 +0.4 797,037 - PGA1_c07680 0.39 -0.3 797,037 - PGA1_c07680 0.39 +0.2 797,043 + PGA1_c07680 0.40 -1.1 797,043 + PGA1_c07680 0.40 -0.1 797,043 + PGA1_c07680 0.40 -2.1 797,043 + PGA1_c07680 0.40 -0.0 797,043 + PGA1_c07680 0.40 -0.5 797,043 + PGA1_c07680 0.40 +0.5 797,043 + PGA1_c07680 0.40 -1.5 797,051 - PGA1_c07680 0.41 +0.9 797,051 - PGA1_c07680 0.41 -2.3 797,051 - PGA1_c07680 0.41 -0.5 797,071 - PGA1_c07680 0.44 +0.0 797,096 + PGA1_c07680 0.48 +1.5 797,096 + PGA1_c07680 0.48 -0.9 797,114 + PGA1_c07680 0.51 -0.7 797,119 - PGA1_c07680 0.52 -0.5 797,127 - PGA1_c07680 0.53 +0.3 797,154 - PGA1_c07680 0.58 -0.2 797,163 + PGA1_c07680 0.59 +2.5 797,163 + PGA1_c07680 0.59 +0.5 797,169 + PGA1_c07680 0.60 -0.5 797,169 - PGA1_c07680 0.60 -1.1 797,181 + PGA1_c07680 0.62 -1.1 797,181 + PGA1_c07680 0.62 -1.5 797,181 + PGA1_c07680 0.62 -1.5 797,196 + PGA1_c07680 0.65 -1.8 797,206 - PGA1_c07680 0.66 +1.5 797,206 - PGA1_c07680 0.66 +0.5 797,206 - PGA1_c07680 0.66 -1.5 797,215 + PGA1_c07680 0.68 -0.5 797,215 + PGA1_c07680 0.68 +0.5 797,215 + PGA1_c07680 0.68 -0.1 797,215 + PGA1_c07680 0.68 -0.1 797,215 + PGA1_c07680 0.68 +0.8 797,215 + PGA1_c07680 0.68 +0.7 797,215 + PGA1_c07680 0.68 +0.5 797,215 + PGA1_c07680 0.68 -0.2 797,215 + PGA1_c07680 0.68 +2.5 797,215 + PGA1_c07680 0.68 -2.5 797,219 - PGA1_c07680 0.68 +0.5 797,223 - PGA1_c07680 0.69 -0.4 797,223 - PGA1_c07680 0.69 -1.8 797,223 - PGA1_c07680 0.69 -1.3 797,274 - PGA1_c07680 0.78 +0.9 797,274 - PGA1_c07680 0.78 -0.0 797,292 + PGA1_c07680 0.80 -0.2 797,300 - PGA1_c07680 0.82 -1.1 797,321 - PGA1_c07680 0.85 -0.2 797,325 + PGA1_c07680 0.86 +0.5 797,333 - PGA1_c07680 0.87 -0.6 797,370 - -0.6 797,405 + -0.2 797,405 + -0.5 797,405 + -1.8 797,413 - +0.9 797,413 - -0.1 797,413 - -1.2 797,464 + -0.5 797,469 - -1.5 797,469 - -1.1 797,498 - +0.5 797,512 + -0.2 797,512 + -1.5 797,512 + -1.1 797,529 + +0.1 797,529 + -0.1 797,529 + +0.5 797,534 + +1.5 797,537 - +0.5 797,539 - -0.2 797,550 + +0.2 797,566 - +1.7 797,581 + PGA1_c07690 0.11 -2.3 797,605 - PGA1_c07690 0.13 +0.5 797,624 - PGA1_c07690 0.15 +0.5
Or see this region's nucleotide sequence