Strain Fitness in Marinobacter adhaerens HP15 around HP15_673

Experiment: m.b. Nickel (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_671 and HP15_672 overlap by 8 nucleotidesHP15_672 and HP15_673 are separated by 3 nucleotidesHP15_673 and HP15_674 overlap by 11 nucleotidesHP15_674 and HP15_675 are separated by 117 nucleotides HP15_671: HP15_671 - phage portal protein, lambda family, at 690,569 to 692,146 _671 HP15_672: HP15_672 - conserved hypothetical protein, at 692,139 to 692,681 _672 HP15_673: HP15_673 - phage terminase GpA, at 692,685 to 694,646 _673 HP15_674: HP15_674 - phage-related packaging protein, at 694,636 to 695,154 _674 HP15_675: HP15_675 - conserved hypothetical protein, at 695,272 to 695,703 _675 Position (kb) 692 693 694 695Strain fitness (log2 ratio) -2 -1 0 1 2at 691.827 kb on + strand, within HP15_671at 691.827 kb on + strand, within HP15_671at 691.827 kb on + strand, within HP15_671at 691.891 kb on - strand, within HP15_671at 691.972 kb on + strand, within HP15_671at 692.019 kb on + strandat 692.019 kb on + strandat 692.027 kb on - strandat 692.027 kb on - strandat 692.092 kb on + strandat 692.150 kb on + strandat 692.157 kb on - strandat 692.204 kb on - strand, within HP15_672at 692.284 kb on - strand, within HP15_672at 692.301 kb on + strand, within HP15_672at 692.309 kb on - strand, within HP15_672at 692.503 kb on + strand, within HP15_672at 692.503 kb on + strand, within HP15_672at 692.506 kb on - strand, within HP15_672at 692.540 kb on - strand, within HP15_672at 692.540 kb on - strand, within HP15_672at 692.595 kb on - strand, within HP15_672at 692.848 kb on + strandat 692.856 kb on - strandat 692.856 kb on - strandat 692.856 kb on - strandat 692.970 kb on - strand, within HP15_673at 693.044 kb on + strand, within HP15_673at 693.052 kb on - strand, within HP15_673at 693.270 kb on - strand, within HP15_673at 693.320 kb on - strand, within HP15_673at 693.399 kb on + strand, within HP15_673at 693.421 kb on + strand, within HP15_673at 693.431 kb on + strand, within HP15_673at 693.441 kb on + strand, within HP15_673at 693.449 kb on - strand, within HP15_673at 693.554 kb on + strand, within HP15_673at 693.554 kb on + strand, within HP15_673at 693.654 kb on + strand, within HP15_673at 693.696 kb on - strand, within HP15_673at 693.696 kb on - strand, within HP15_673at 693.905 kb on - strand, within HP15_673at 693.921 kb on - strand, within HP15_673at 693.957 kb on - strand, within HP15_673at 694.022 kb on + strand, within HP15_673at 694.105 kb on + strand, within HP15_673at 694.113 kb on - strand, within HP15_673at 694.113 kb on - strand, within HP15_673at 694.166 kb on - strand, within HP15_673at 694.186 kb on + strand, within HP15_673at 694.219 kb on - strand, within HP15_673at 694.258 kb on - strand, within HP15_673at 694.387 kb on + strand, within HP15_673at 694.405 kb on - strand, within HP15_673at 694.410 kb on - strand, within HP15_673at 694.410 kb on - strand, within HP15_673at 694.410 kb on - strand, within HP15_673at 694.461 kb on - strandat 694.480 kb on + strandat 694.546 kb on + strandat 694.546 kb on + strandat 694.549 kb on - strandat 694.554 kb on - strandat 694.554 kb on - strandat 694.556 kb on + strandat 694.641 kb on - strandat 694.666 kb on - strandat 694.728 kb on - strand, within HP15_674at 694.730 kb on + strand, within HP15_674at 694.745 kb on + strand, within HP15_674at 694.749 kb on - strand, within HP15_674at 694.826 kb on + strand, within HP15_674at 694.834 kb on - strand, within HP15_674at 694.961 kb on + strand, within HP15_674at 695.043 kb on - strand, within HP15_674at 695.123 kb on - strandat 695.128 kb on - strandat 695.143 kb on - strandat 695.167 kb on - strandat 695.227 kb on + strandat 695.233 kb on + strandat 695.233 kb on - strandat 695.250 kb on - strandat 695.271 kb on + strandat 695.320 kb on - strand, within HP15_675at 695.322 kb on + strand, within HP15_675at 695.426 kb on - strand, within HP15_675at 695.532 kb on + strand, within HP15_675at 695.537 kb on + strand, within HP15_675at 695.571 kb on - strand, within HP15_675at 695.603 kb on + strand, within HP15_675at 695.609 kb on + strand, within HP15_675at 695.617 kb on - strand, within HP15_675

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1 mM
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691,827 + HP15_671 0.80 +0.0
691,827 + HP15_671 0.80 -0.5
691,827 + HP15_671 0.80 -1.1
691,891 - HP15_671 0.84 +0.2
691,972 + HP15_671 0.89 -0.3
692,019 + -0.2
692,019 + -0.6
692,027 - +2.3
692,027 - -0.9
692,092 + -0.3
692,150 + -0.5
692,157 - -0.0
692,204 - HP15_672 0.12 -0.5
692,284 - HP15_672 0.27 -0.3
692,301 + HP15_672 0.30 -0.8
692,309 - HP15_672 0.31 -0.3
692,503 + HP15_672 0.67 -0.3
692,503 + HP15_672 0.67 -0.1
692,506 - HP15_672 0.68 -1.5
692,540 - HP15_672 0.74 +0.4
692,540 - HP15_672 0.74 -0.3
692,595 - HP15_672 0.84 +2.7
692,848 + -0.3
692,856 - -0.8
692,856 - -0.5
692,856 - -0.5
692,970 - HP15_673 0.15 -0.4
693,044 + HP15_673 0.18 +0.5
693,052 - HP15_673 0.19 +2.4
693,270 - HP15_673 0.30 +0.2
693,320 - HP15_673 0.32 -0.3
693,399 + HP15_673 0.36 -0.2
693,421 + HP15_673 0.38 -0.5
693,431 + HP15_673 0.38 -0.1
693,441 + HP15_673 0.39 -0.4
693,449 - HP15_673 0.39 -0.4
693,554 + HP15_673 0.44 +0.2
693,554 + HP15_673 0.44 +0.3
693,654 + HP15_673 0.49 -0.2
693,696 - HP15_673 0.52 -0.4
693,696 - HP15_673 0.52 -0.1
693,905 - HP15_673 0.62 +0.4
693,921 - HP15_673 0.63 -0.4
693,957 - HP15_673 0.65 -0.2
694,022 + HP15_673 0.68 +0.5
694,105 + HP15_673 0.72 -0.6
694,113 - HP15_673 0.73 -1.7
694,113 - HP15_673 0.73 -1.0
694,166 - HP15_673 0.75 +0.2
694,186 + HP15_673 0.77 +0.5
694,219 - HP15_673 0.78 -1.0
694,258 - HP15_673 0.80 -0.4
694,387 + HP15_673 0.87 -0.2
694,405 - HP15_673 0.88 +0.6
694,410 - HP15_673 0.88 -0.7
694,410 - HP15_673 0.88 -0.4
694,410 - HP15_673 0.88 -1.2
694,461 - -0.8
694,480 + -1.9
694,546 + -0.4
694,546 + +0.3
694,549 - -0.4
694,554 - -0.1
694,554 - -0.6
694,556 + +1.2
694,641 - -0.4
694,666 - -0.2
694,728 - HP15_674 0.18 -0.8
694,730 + HP15_674 0.18 -0.6
694,745 + HP15_674 0.21 +0.2
694,749 - HP15_674 0.22 -1.6
694,826 + HP15_674 0.37 -1.6
694,834 - HP15_674 0.38 +2.2
694,961 + HP15_674 0.63 -0.3
695,043 - HP15_674 0.78 +0.0
695,123 - -0.3
695,128 - -1.1
695,143 - -0.2
695,167 - +0.1
695,227 + +0.4
695,233 + -0.1
695,233 - +0.2
695,250 - +0.0
695,271 + -0.2
695,320 - HP15_675 0.11 +0.7
695,322 + HP15_675 0.12 -0.5
695,426 - HP15_675 0.36 +0.0
695,532 + HP15_675 0.60 -0.3
695,537 + HP15_675 0.61 -0.1
695,571 - HP15_675 0.69 +0.8
695,603 + HP15_675 0.77 +1.0
695,609 + HP15_675 0.78 -1.0
695,617 - HP15_675 0.80 -0.4

Or see this region's nucleotide sequence