Experiment: m.b. Polymyxin B sulfate 0.0008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c04770 and PGA1_c04780 are separated by 116 nucleotides PGA1_c04780 and PGA1_c04790 are separated by 165 nucleotides PGA1_c04790 and PGA1_c04800 are separated by 92 nucleotides
PGA1_c04770: PGA1_c04770 - apolipoprotein N-acyltransferase Int, at 468,191 to 469,702
_c04770
PGA1_c04780: PGA1_c04780 - S-adenosylmethionine synthetase MetK, at 469,819 to 471,000
_c04780
PGA1_c04790: PGA1_c04790 - Clp protease., at 471,166 to 471,876
_c04790
PGA1_c04800: PGA1_c04800 - tRNA (guanine-N(7)-)-methyltransferase TrmB, at 471,969 to 472,733
_c04800
Position (kb) 469
470
471
472 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 469.685 kb on - strand at 469.695 kb on + strand at 469.695 kb on + strand at 469.695 kb on + strand at 469.695 kb on + strand at 469.695 kb on + strand at 469.695 kb on + strand at 469.695 kb on + strand at 469.695 kb on + strand at 469.695 kb on + strand at 469.695 kb on + strand at 469.695 kb on + strand at 469.695 kb on + strand at 469.695 kb on + strand at 469.695 kb on + strand at 469.703 kb on - strand at 469.703 kb on - strand at 469.711 kb on + strand at 469.744 kb on + strand at 469.795 kb on + strand at 471.033 kb on - strand at 471.047 kb on - strand at 471.097 kb on + strand at 471.127 kb on + strand at 471.127 kb on + strand at 471.127 kb on + strand at 471.127 kb on + strand at 471.127 kb on + strand at 471.127 kb on + strand at 471.127 kb on + strand at 471.127 kb on + strand at 471.127 kb on + strand at 471.127 kb on + strand at 471.127 kb on + strand at 471.127 kb on + strand at 471.127 kb on + strand at 471.127 kb on + strand at 471.127 kb on + strand at 471.127 kb on + strand at 471.127 kb on + strand at 471.127 kb on + strand at 471.127 kb on + strand at 471.127 kb on + strand at 471.127 kb on + strand at 471.127 kb on + strand at 471.127 kb on + strand at 471.127 kb on + strand at 471.127 kb on + strand at 471.127 kb on + strand at 471.127 kb on + strand at 471.127 kb on + strand at 471.127 kb on + strand at 471.127 kb on + strand at 471.127 kb on + strand at 471.135 kb on - strand at 471.135 kb on - strand at 471.135 kb on - strand at 471.135 kb on - strand at 471.135 kb on - strand at 471.135 kb on - strand at 471.135 kb on - strand at 471.135 kb on - strand at 471.135 kb on - strand at 471.135 kb on - strand at 471.135 kb on - strand at 471.135 kb on - strand at 471.135 kb on - strand at 471.135 kb on - strand at 471.135 kb on - strand at 471.135 kb on - strand at 471.135 kb on - strand at 471.135 kb on - strand at 471.157 kb on - strand at 471.225 kb on - strand at 471.257 kb on - strand, within PGA1_c04790 at 471.268 kb on + strand, within PGA1_c04790 at 471.345 kb on + strand, within PGA1_c04790 at 471.345 kb on + strand, within PGA1_c04790 at 471.353 kb on + strand, within PGA1_c04790 at 471.353 kb on - strand, within PGA1_c04790 at 471.386 kb on - strand, within PGA1_c04790 at 471.453 kb on - strand, within PGA1_c04790 at 471.455 kb on + strand, within PGA1_c04790 at 471.565 kb on - strand, within PGA1_c04790 at 471.626 kb on - strand, within PGA1_c04790 at 471.640 kb on + strand, within PGA1_c04790 at 471.640 kb on + strand, within PGA1_c04790 at 471.640 kb on + strand, within PGA1_c04790 at 471.640 kb on + strand, within PGA1_c04790 at 471.648 kb on - strand, within PGA1_c04790 at 471.648 kb on - strand, within PGA1_c04790 at 471.650 kb on + strand, within PGA1_c04790 at 471.658 kb on - strand, within PGA1_c04790 at 471.658 kb on - strand, within PGA1_c04790 at 471.658 kb on - strand, within PGA1_c04790 at 471.670 kb on + strand, within PGA1_c04790 at 471.678 kb on - strand, within PGA1_c04790 at 471.678 kb on - strand, within PGA1_c04790 at 471.760 kb on - strand, within PGA1_c04790 at 471.767 kb on + strand, within PGA1_c04790 at 471.772 kb on + strand, within PGA1_c04790 at 471.772 kb on + strand, within PGA1_c04790 at 471.772 kb on + strand, within PGA1_c04790 at 471.775 kb on - strand, within PGA1_c04790 at 471.775 kb on - strand, within PGA1_c04790 at 471.775 kb on - strand, within PGA1_c04790 at 471.780 kb on - strand, within PGA1_c04790 at 471.780 kb on - strand, within PGA1_c04790 at 471.808 kb on + strand at 471.898 kb on + strand at 471.938 kb on + strand at 471.946 kb on - strand at 471.988 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Polymyxin B sulfate 0.0008 mg/ml remove 469,685 - +1.0 469,695 + +0.9 469,695 + -0.8 469,695 + -0.8 469,695 + -0.4 469,695 + +0.3 469,695 + +0.4 469,695 + -0.1 469,695 + +1.1 469,695 + +0.5 469,695 + -0.1 469,695 + -0.4 469,695 + +0.3 469,695 + -0.9 469,695 + +0.7 469,703 - +2.0 469,703 - +0.2 469,711 + +0.6 469,744 + +1.1 469,795 + +0.3 471,033 - +0.1 471,047 - -0.4 471,097 + -3.6 471,127 + -1.4 471,127 + -0.3 471,127 + -0.7 471,127 + +1.2 471,127 + -1.3 471,127 + +1.0 471,127 + -0.2 471,127 + +1.0 471,127 + +0.3 471,127 + +0.9 471,127 + -0.2 471,127 + +0.3 471,127 + -0.4 471,127 + -0.4 471,127 + +1.4 471,127 + -1.4 471,127 + +0.9 471,127 + +1.1 471,127 + -1.6 471,127 + -0.6 471,127 + -0.4 471,127 + +0.1 471,127 + +1.5 471,127 + +1.0 471,127 + +1.6 471,127 + +1.1 471,127 + -0.2 471,127 + -0.1 471,127 + +0.3 471,127 + -0.3 471,127 + +0.7 471,135 - +1.7 471,135 - +1.5 471,135 - -0.1 471,135 - +0.2 471,135 - +0.2 471,135 - +0.5 471,135 - -0.3 471,135 - +0.2 471,135 - +0.7 471,135 - -0.0 471,135 - +0.6 471,135 - +0.4 471,135 - +0.3 471,135 - +0.6 471,135 - -0.4 471,135 - +0.5 471,135 - -1.0 471,135 - -0.5 471,157 - -0.0 471,225 - -1.1 471,257 - PGA1_c04790 0.13 +0.2 471,268 + PGA1_c04790 0.14 -0.7 471,345 + PGA1_c04790 0.25 -0.1 471,345 + PGA1_c04790 0.25 -0.6 471,353 + PGA1_c04790 0.26 -1.5 471,353 - PGA1_c04790 0.26 +2.2 471,386 - PGA1_c04790 0.31 +1.3 471,453 - PGA1_c04790 0.40 -0.3 471,455 + PGA1_c04790 0.41 +0.1 471,565 - PGA1_c04790 0.56 +0.4 471,626 - PGA1_c04790 0.65 +0.5 471,640 + PGA1_c04790 0.67 +1.1 471,640 + PGA1_c04790 0.67 -0.4 471,640 + PGA1_c04790 0.67 -0.2 471,640 + PGA1_c04790 0.67 +0.7 471,648 - PGA1_c04790 0.68 -0.2 471,648 - PGA1_c04790 0.68 +0.6 471,650 + PGA1_c04790 0.68 -1.0 471,658 - PGA1_c04790 0.69 +0.1 471,658 - PGA1_c04790 0.69 -1.1 471,658 - PGA1_c04790 0.69 -0.1 471,670 + PGA1_c04790 0.71 -0.0 471,678 - PGA1_c04790 0.72 +1.1 471,678 - PGA1_c04790 0.72 +1.6 471,760 - PGA1_c04790 0.84 +1.0 471,767 + PGA1_c04790 0.85 +0.0 471,772 + PGA1_c04790 0.85 -0.2 471,772 + PGA1_c04790 0.85 +0.2 471,772 + PGA1_c04790 0.85 -0.7 471,775 - PGA1_c04790 0.86 +1.0 471,775 - PGA1_c04790 0.86 -1.7 471,775 - PGA1_c04790 0.86 -0.4 471,780 - PGA1_c04790 0.86 +2.2 471,780 - PGA1_c04790 0.86 +0.6 471,808 + -0.0 471,898 + +0.7 471,938 + +0.6 471,946 - -0.1 471,988 - +0.3
Or see this region's nucleotide sequence