Strain Fitness in Marinobacter adhaerens HP15 around HP15_3853

Experiment: m.b. Nickel (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3852 and HP15_3853 are separated by 4 nucleotidesHP15_3853 and HP15_3854 are separated by 148 nucleotidesHP15_3854 and HP15_3855 are separated by 207 nucleotides HP15_3852: HP15_3852 - sodium/solute symporter-like protein, at 4,077,779 to 4,079,182 _3852 HP15_3853: HP15_3853 - conserved hypothetical protein, at 4,079,187 to 4,080,137 _3853 HP15_3854: HP15_3854 - L-2,4-diaminobutyric acid acetyltransferase, at 4,080,286 to 4,080,801 _3854 HP15_3855: HP15_3855 - 2,4-diaminobutyrate 4-transaminase, at 4,081,009 to 4,082,277 _3855 Position (kb) 4079 4080 4081Strain fitness (log2 ratio) -1 0 1at 4078.276 kb on + strand, within HP15_3852at 4078.276 kb on + strand, within HP15_3852at 4078.325 kb on + strand, within HP15_3852at 4078.403 kb on - strand, within HP15_3852at 4078.502 kb on + strand, within HP15_3852at 4078.542 kb on + strand, within HP15_3852at 4078.550 kb on - strand, within HP15_3852at 4078.755 kb on - strand, within HP15_3852at 4078.784 kb on - strand, within HP15_3852at 4078.855 kb on - strand, within HP15_3852at 4079.184 kb on - strandat 4079.184 kb on - strandat 4079.216 kb on - strandat 4079.227 kb on - strandat 4079.250 kb on - strandat 4079.259 kb on + strandat 4079.312 kb on - strand, within HP15_3853at 4079.339 kb on + strand, within HP15_3853at 4079.385 kb on + strand, within HP15_3853at 4079.417 kb on + strand, within HP15_3853at 4079.684 kb on - strand, within HP15_3853at 4079.693 kb on - strand, within HP15_3853at 4079.711 kb on - strand, within HP15_3853at 4079.798 kb on - strand, within HP15_3853at 4079.826 kb on + strand, within HP15_3853at 4079.826 kb on + strand, within HP15_3853at 4079.829 kb on - strand, within HP15_3853at 4079.829 kb on - strand, within HP15_3853at 4079.829 kb on - strand, within HP15_3853at 4079.834 kb on - strand, within HP15_3853at 4079.834 kb on - strand, within HP15_3853at 4079.851 kb on - strand, within HP15_3853at 4079.861 kb on - strand, within HP15_3853at 4079.922 kb on + strand, within HP15_3853at 4079.922 kb on + strand, within HP15_3853at 4079.922 kb on + strand, within HP15_3853at 4079.925 kb on - strand, within HP15_3853at 4080.004 kb on + strand, within HP15_3853at 4080.035 kb on + strand, within HP15_3853at 4080.043 kb on - strandat 4080.298 kb on + strandat 4080.412 kb on + strand, within HP15_3854at 4080.505 kb on - strand, within HP15_3854at 4080.667 kb on - strand, within HP15_3854at 4080.667 kb on - strand, within HP15_3854at 4080.816 kb on + strandat 4080.818 kb on - strandat 4080.818 kb on - strandat 4080.909 kb on + strandat 4080.917 kb on - strandat 4080.924 kb on + strandat 4080.950 kb on - strandat 4080.993 kb on + strandat 4080.999 kb on + strandat 4081.047 kb on + strandat 4081.050 kb on - strandat 4081.069 kb on + strandat 4081.093 kb on + strandat 4081.095 kb on + strandat 4081.101 kb on - strandat 4081.103 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1 mM
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4,078,276 + HP15_3852 0.35 +0.5
4,078,276 + HP15_3852 0.35 -0.3
4,078,325 + HP15_3852 0.39 -0.1
4,078,403 - HP15_3852 0.44 -0.1
4,078,502 + HP15_3852 0.51 +0.9
4,078,542 + HP15_3852 0.54 -0.1
4,078,550 - HP15_3852 0.55 -0.2
4,078,755 - HP15_3852 0.70 -0.2
4,078,784 - HP15_3852 0.72 -0.4
4,078,855 - HP15_3852 0.77 -0.4
4,079,184 - -0.4
4,079,184 - -0.3
4,079,216 - +0.2
4,079,227 - -0.2
4,079,250 - -0.0
4,079,259 + -0.0
4,079,312 - HP15_3853 0.13 -0.3
4,079,339 + HP15_3853 0.16 -0.5
4,079,385 + HP15_3853 0.21 +0.6
4,079,417 + HP15_3853 0.24 +0.7
4,079,684 - HP15_3853 0.52 +0.3
4,079,693 - HP15_3853 0.53 +0.5
4,079,711 - HP15_3853 0.55 +0.4
4,079,798 - HP15_3853 0.64 -0.0
4,079,826 + HP15_3853 0.67 -0.8
4,079,826 + HP15_3853 0.67 +0.8
4,079,829 - HP15_3853 0.68 +0.5
4,079,829 - HP15_3853 0.68 -0.0
4,079,829 - HP15_3853 0.68 +1.1
4,079,834 - HP15_3853 0.68 +0.6
4,079,834 - HP15_3853 0.68 +0.1
4,079,851 - HP15_3853 0.70 +1.2
4,079,861 - HP15_3853 0.71 +0.6
4,079,922 + HP15_3853 0.77 +0.7
4,079,922 + HP15_3853 0.77 -0.4
4,079,922 + HP15_3853 0.77 +0.3
4,079,925 - HP15_3853 0.78 +0.2
4,080,004 + HP15_3853 0.86 +1.1
4,080,035 + HP15_3853 0.89 -0.0
4,080,043 - +0.3
4,080,298 + +0.9
4,080,412 + HP15_3854 0.24 +0.9
4,080,505 - HP15_3854 0.42 +0.1
4,080,667 - HP15_3854 0.74 +1.1
4,080,667 - HP15_3854 0.74 +1.1
4,080,816 + +0.1
4,080,818 - +0.8
4,080,818 - +0.6
4,080,909 + -1.5
4,080,917 - +0.8
4,080,924 + +0.2
4,080,950 - -0.2
4,080,993 + -0.3
4,080,999 + +0.1
4,081,047 + +0.4
4,081,050 - +1.5
4,081,069 + -0.4
4,081,093 + +0.2
4,081,095 + -0.1
4,081,101 - +0.3
4,081,103 - -0.4

Or see this region's nucleotide sequence