Strain Fitness in Marinobacter adhaerens HP15 around HP15_3039

Experiment: m.b. Nickel (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3038 and HP15_3039 are separated by 14 nucleotidesHP15_3039 and HP15_3040 overlap by 13 nucleotides HP15_3038: HP15_3038 - N-succinylarginine dihydrolase, at 3,183,955 to 3,185,295 _3038 HP15_3039: HP15_3039 - N-succinylglutamate 5-semialdehyde dehydrogenase, at 3,185,310 to 3,186,785 _3039 HP15_3040: HP15_3040 - Arginine N-succinyltransferase (EC 2.3.1.109) (from data), at 3,186,773 to 3,187,873 _3040 Position (kb) 3185 3186 3187Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3184.340 kb on + strand, within HP15_3038at 3184.368 kb on + strand, within HP15_3038at 3184.376 kb on - strand, within HP15_3038at 3184.508 kb on + strand, within HP15_3038at 3184.568 kb on + strand, within HP15_3038at 3184.643 kb on - strand, within HP15_3038at 3184.643 kb on - strand, within HP15_3038at 3184.760 kb on + strand, within HP15_3038at 3184.868 kb on - strand, within HP15_3038at 3184.931 kb on - strand, within HP15_3038at 3184.978 kb on - strand, within HP15_3038at 3185.073 kb on - strand, within HP15_3038at 3185.103 kb on + strand, within HP15_3038at 3185.122 kb on + strand, within HP15_3038at 3185.122 kb on + strand, within HP15_3038at 3185.219 kb on + strandat 3185.219 kb on + strandat 3185.386 kb on + strandat 3185.518 kb on - strand, within HP15_3039at 3185.542 kb on - strand, within HP15_3039at 3185.659 kb on + strand, within HP15_3039at 3185.761 kb on + strand, within HP15_3039at 3185.761 kb on + strand, within HP15_3039at 3185.943 kb on + strand, within HP15_3039at 3186.099 kb on - strand, within HP15_3039at 3186.101 kb on + strand, within HP15_3039at 3186.161 kb on - strand, within HP15_3039at 3186.278 kb on - strand, within HP15_3039at 3186.283 kb on - strand, within HP15_3039at 3186.305 kb on + strand, within HP15_3039at 3186.451 kb on + strand, within HP15_3039at 3186.558 kb on - strand, within HP15_3039at 3186.737 kb on - strandat 3186.795 kb on + strandat 3186.803 kb on - strandat 3186.805 kb on - strandat 3186.899 kb on - strand, within HP15_3040at 3186.913 kb on + strand, within HP15_3040at 3186.987 kb on + strand, within HP15_3040at 3186.988 kb on - strand, within HP15_3040at 3187.154 kb on - strand, within HP15_3040at 3187.160 kb on + strand, within HP15_3040at 3187.179 kb on + strand, within HP15_3040at 3187.327 kb on + strand, within HP15_3040at 3187.328 kb on - strand, within HP15_3040at 3187.491 kb on + strand, within HP15_3040at 3187.503 kb on + strand, within HP15_3040at 3187.506 kb on - strand, within HP15_3040at 3187.546 kb on + strand, within HP15_3040at 3187.633 kb on - strand, within HP15_3040at 3187.682 kb on + strand, within HP15_3040

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1 mM
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3,184,340 + HP15_3038 0.29 -1.5
3,184,368 + HP15_3038 0.31 +0.4
3,184,376 - HP15_3038 0.31 -1.4
3,184,508 + HP15_3038 0.41 -1.7
3,184,568 + HP15_3038 0.46 +0.4
3,184,643 - HP15_3038 0.51 -1.0
3,184,643 - HP15_3038 0.51 -2.4
3,184,760 + HP15_3038 0.60 +3.6
3,184,868 - HP15_3038 0.68 -2.5
3,184,931 - HP15_3038 0.73 -2.1
3,184,978 - HP15_3038 0.76 -2.1
3,185,073 - HP15_3038 0.83 -1.1
3,185,103 + HP15_3038 0.86 -2.5
3,185,122 + HP15_3038 0.87 -0.4
3,185,122 + HP15_3038 0.87 -0.9
3,185,219 + +0.6
3,185,219 + -1.4
3,185,386 + -0.6
3,185,518 - HP15_3039 0.14 -0.8
3,185,542 - HP15_3039 0.16 -0.4
3,185,659 + HP15_3039 0.24 +0.6
3,185,761 + HP15_3039 0.31 -2.0
3,185,761 + HP15_3039 0.31 -1.3
3,185,943 + HP15_3039 0.43 -1.7
3,186,099 - HP15_3039 0.53 -0.8
3,186,101 + HP15_3039 0.54 -2.7
3,186,161 - HP15_3039 0.58 -0.7
3,186,278 - HP15_3039 0.66 +0.1
3,186,283 - HP15_3039 0.66 -1.2
3,186,305 + HP15_3039 0.67 -0.9
3,186,451 + HP15_3039 0.77 -1.0
3,186,558 - HP15_3039 0.85 +1.8
3,186,737 - -1.4
3,186,795 + -0.1
3,186,803 - +1.2
3,186,805 - +0.2
3,186,899 - HP15_3040 0.11 +0.2
3,186,913 + HP15_3040 0.13 -0.8
3,186,987 + HP15_3040 0.19 +1.1
3,186,988 - HP15_3040 0.20 -0.5
3,187,154 - HP15_3040 0.35 +0.2
3,187,160 + HP15_3040 0.35 -0.1
3,187,179 + HP15_3040 0.37 -0.1
3,187,327 + HP15_3040 0.50 -0.3
3,187,328 - HP15_3040 0.50 +0.5
3,187,491 + HP15_3040 0.65 +0.1
3,187,503 + HP15_3040 0.66 +0.0
3,187,506 - HP15_3040 0.67 +0.6
3,187,546 + HP15_3040 0.70 +0.2
3,187,633 - HP15_3040 0.78 +1.5
3,187,682 + HP15_3040 0.83 -0.0

Or see this region's nucleotide sequence