Experiment: m.b. Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3038 and HP15_3039 are separated by 14 nucleotides HP15_3039 and HP15_3040 overlap by 13 nucleotides
HP15_3038: HP15_3038 - N-succinylarginine dihydrolase, at 3,183,955 to 3,185,295
_3038
HP15_3039: HP15_3039 - N-succinylglutamate 5-semialdehyde dehydrogenase, at 3,185,310 to 3,186,785
_3039
HP15_3040: HP15_3040 - Arginine N-succinyltransferase (EC 2.3.1.109) (from data) , at 3,186,773 to 3,187,873
_3040
Position (kb)
3185
3186
3187 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3184.340 kb on + strand, within HP15_3038 at 3184.368 kb on + strand, within HP15_3038 at 3184.376 kb on - strand, within HP15_3038 at 3184.508 kb on + strand, within HP15_3038 at 3184.568 kb on + strand, within HP15_3038 at 3184.643 kb on - strand, within HP15_3038 at 3184.643 kb on - strand, within HP15_3038 at 3184.760 kb on + strand, within HP15_3038 at 3184.868 kb on - strand, within HP15_3038 at 3184.931 kb on - strand, within HP15_3038 at 3184.978 kb on - strand, within HP15_3038 at 3185.073 kb on - strand, within HP15_3038 at 3185.103 kb on + strand, within HP15_3038 at 3185.122 kb on + strand, within HP15_3038 at 3185.122 kb on + strand, within HP15_3038 at 3185.219 kb on + strand at 3185.219 kb on + strand at 3185.386 kb on + strand at 3185.518 kb on - strand, within HP15_3039 at 3185.542 kb on - strand, within HP15_3039 at 3185.659 kb on + strand, within HP15_3039 at 3185.761 kb on + strand, within HP15_3039 at 3185.761 kb on + strand, within HP15_3039 at 3185.943 kb on + strand, within HP15_3039 at 3186.099 kb on - strand, within HP15_3039 at 3186.101 kb on + strand, within HP15_3039 at 3186.161 kb on - strand, within HP15_3039 at 3186.278 kb on - strand, within HP15_3039 at 3186.283 kb on - strand, within HP15_3039 at 3186.305 kb on + strand, within HP15_3039 at 3186.451 kb on + strand, within HP15_3039 at 3186.558 kb on - strand, within HP15_3039 at 3186.737 kb on - strand at 3186.795 kb on + strand at 3186.803 kb on - strand at 3186.805 kb on - strand at 3186.899 kb on - strand, within HP15_3040 at 3186.913 kb on + strand, within HP15_3040 at 3186.987 kb on + strand, within HP15_3040 at 3186.988 kb on - strand, within HP15_3040 at 3187.154 kb on - strand, within HP15_3040 at 3187.160 kb on + strand, within HP15_3040 at 3187.179 kb on + strand, within HP15_3040 at 3187.327 kb on + strand, within HP15_3040 at 3187.328 kb on - strand, within HP15_3040 at 3187.491 kb on + strand, within HP15_3040 at 3187.503 kb on + strand, within HP15_3040 at 3187.506 kb on - strand, within HP15_3040 at 3187.546 kb on + strand, within HP15_3040 at 3187.633 kb on - strand, within HP15_3040 at 3187.682 kb on + strand, within HP15_3040
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1 mM remove 3,184,340 + HP15_3038 0.29 -1.5 3,184,368 + HP15_3038 0.31 +0.4 3,184,376 - HP15_3038 0.31 -1.4 3,184,508 + HP15_3038 0.41 -1.7 3,184,568 + HP15_3038 0.46 +0.4 3,184,643 - HP15_3038 0.51 -1.0 3,184,643 - HP15_3038 0.51 -2.4 3,184,760 + HP15_3038 0.60 +3.6 3,184,868 - HP15_3038 0.68 -2.5 3,184,931 - HP15_3038 0.73 -2.1 3,184,978 - HP15_3038 0.76 -2.1 3,185,073 - HP15_3038 0.83 -1.1 3,185,103 + HP15_3038 0.86 -2.5 3,185,122 + HP15_3038 0.87 -0.4 3,185,122 + HP15_3038 0.87 -0.9 3,185,219 + +0.6 3,185,219 + -1.4 3,185,386 + -0.6 3,185,518 - HP15_3039 0.14 -0.8 3,185,542 - HP15_3039 0.16 -0.4 3,185,659 + HP15_3039 0.24 +0.6 3,185,761 + HP15_3039 0.31 -2.0 3,185,761 + HP15_3039 0.31 -1.3 3,185,943 + HP15_3039 0.43 -1.7 3,186,099 - HP15_3039 0.53 -0.8 3,186,101 + HP15_3039 0.54 -2.7 3,186,161 - HP15_3039 0.58 -0.7 3,186,278 - HP15_3039 0.66 +0.1 3,186,283 - HP15_3039 0.66 -1.2 3,186,305 + HP15_3039 0.67 -0.9 3,186,451 + HP15_3039 0.77 -1.0 3,186,558 - HP15_3039 0.85 +1.8 3,186,737 - -1.4 3,186,795 + -0.1 3,186,803 - +1.2 3,186,805 - +0.2 3,186,899 - HP15_3040 0.11 +0.2 3,186,913 + HP15_3040 0.13 -0.8 3,186,987 + HP15_3040 0.19 +1.1 3,186,988 - HP15_3040 0.20 -0.5 3,187,154 - HP15_3040 0.35 +0.2 3,187,160 + HP15_3040 0.35 -0.1 3,187,179 + HP15_3040 0.37 -0.1 3,187,327 + HP15_3040 0.50 -0.3 3,187,328 - HP15_3040 0.50 +0.5 3,187,491 + HP15_3040 0.65 +0.1 3,187,503 + HP15_3040 0.66 +0.0 3,187,506 - HP15_3040 0.67 +0.6 3,187,546 + HP15_3040 0.70 +0.2 3,187,633 - HP15_3040 0.78 +1.5 3,187,682 + HP15_3040 0.83 -0.0
Or see this region's nucleotide sequence