Experiment: m.b. Polymyxin B sulfate 0.0008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c26840 and PGA1_c26850 are separated by 392 nucleotides PGA1_c26850 and PGA1_c26860 overlap by 4 nucleotides PGA1_c26860 and PGA1_c26870 are separated by 14 nucleotides PGA1_c26870 and PGA1_c26880 are separated by 1 nucleotides
PGA1_c26840: PGA1_c26840 - putative phenylacetic acid degradation operon negative regulatory protein, at 2,801,526 to 2,802,350
_c26840
PGA1_c26850: PGA1_c26850 - Predicted metal-binding protein, at 2,802,743 to 2,803,168
_c26850
PGA1_c26860: PGA1_c26860 - putative iron transport system, ATP-binding protein, at 2,803,165 to 2,803,950
_c26860
PGA1_c26870: PGA1_c26870 - putative periplasmic binding protein, at 2,803,965 to 2,804,945
_c26870
PGA1_c26880: PGA1_c26880 - putative iron transport system permease protein, at 2,804,947 to 2,806,026
_c26880
Position (kb)
2803
2804 Strain fitness (log2 ratio)
-1
0
1
2 at 2802.260 kb on - strand, within PGA1_c26840 at 2802.321 kb on - strand at 2802.372 kb on + strand at 2802.382 kb on + strand at 2802.548 kb on - strand at 2802.758 kb on - strand at 2802.913 kb on + strand, within PGA1_c26850 at 2802.913 kb on + strand, within PGA1_c26850 at 2802.913 kb on + strand, within PGA1_c26850 at 2802.913 kb on + strand, within PGA1_c26850 at 2802.921 kb on - strand, within PGA1_c26850 at 2802.921 kb on - strand, within PGA1_c26850 at 2802.967 kb on + strand, within PGA1_c26850 at 2803.961 kb on + strand at 2803.969 kb on - strand at 2804.722 kb on + strand, within PGA1_c26870 at 2804.863 kb on + strand at 2804.908 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Polymyxin B sulfate 0.0008 mg/ml remove 2,802,260 - PGA1_c26840 0.89 +2.1 2,802,321 - +0.5 2,802,372 + -0.1 2,802,382 + +0.1 2,802,548 - +0.9 2,802,758 - +1.1 2,802,913 + PGA1_c26850 0.40 -0.5 2,802,913 + PGA1_c26850 0.40 +0.8 2,802,913 + PGA1_c26850 0.40 +0.7 2,802,913 + PGA1_c26850 0.40 -0.9 2,802,921 - PGA1_c26850 0.42 +1.8 2,802,921 - PGA1_c26850 0.42 +0.5 2,802,967 + PGA1_c26850 0.53 -0.5 2,803,961 + -1.3 2,803,969 - -0.1 2,804,722 + PGA1_c26870 0.77 -1.1 2,804,863 + +2.5 2,804,908 + +1.5
Or see this region's nucleotide sequence