Experiment: m.b. Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_261 and HP15_260 are separated by 18 nucleotides HP15_260 and HP15_262 are separated by 101 nucleotides HP15_262 and HP15_263 overlap by 1 nucleotides HP15_263 and HP15_264 are separated by 81 nucleotides
HP15_261: HP15_261 - hypothetical protein, at 250,951 to 251,220
_261
HP15_260: HP15_260 - hydrolase, alpha/beta fold family protein, at 251,239 to 252,036
_260
HP15_262: HP15_262 - strictosidine synthase family protein, at 252,138 to 253,223
_262
HP15_263: HP15_263 - thioesterase superfamily protein, at 253,223 to 253,684
_263
HP15_264: HP15_264 - NADPH:quinone reductase and related Zn-dependent oxidoreductase, at 253,766 to 254,749
_264
Position (kb) 252
253
254 Strain fitness (log2 ratio) -2
-1
0
1 at 251.187 kb on + strand, within HP15_261 at 251.195 kb on - strand at 251.210 kb on + strand at 251.235 kb on + strand at 251.311 kb on + strand at 251.322 kb on + strand, within HP15_260 at 251.575 kb on - strand, within HP15_260 at 251.605 kb on + strand, within HP15_260 at 251.624 kb on + strand, within HP15_260 at 251.629 kb on + strand, within HP15_260 at 251.637 kb on - strand, within HP15_260 at 251.670 kb on + strand, within HP15_260 at 251.832 kb on + strand, within HP15_260 at 251.832 kb on + strand, within HP15_260 at 251.941 kb on - strand, within HP15_260 at 251.965 kb on - strand at 251.993 kb on - strand at 252.044 kb on - strand at 252.044 kb on - strand at 252.085 kb on - strand at 252.179 kb on + strand at 252.187 kb on - strand at 252.319 kb on + strand, within HP15_262 at 252.361 kb on - strand, within HP15_262 at 252.469 kb on + strand, within HP15_262 at 252.519 kb on + strand, within HP15_262 at 252.681 kb on - strand, within HP15_262 at 252.793 kb on - strand, within HP15_262 at 252.909 kb on + strand, within HP15_262 at 252.958 kb on - strand, within HP15_262 at 253.007 kb on - strand, within HP15_262 at 253.068 kb on + strand, within HP15_262 at 253.076 kb on - strand, within HP15_262 at 253.140 kb on + strand at 253.280 kb on - strand, within HP15_263 at 253.526 kb on - strand, within HP15_263 at 253.550 kb on + strand, within HP15_263 at 253.625 kb on + strand, within HP15_263 at 253.676 kb on + strand at 253.705 kb on - strand at 253.819 kb on - strand at 253.908 kb on + strand, within HP15_264 at 253.908 kb on + strand, within HP15_264 at 253.914 kb on + strand, within HP15_264 at 253.922 kb on - strand, within HP15_264 at 254.031 kb on + strand, within HP15_264 at 254.039 kb on - strand, within HP15_264 at 254.054 kb on - strand, within HP15_264 at 254.111 kb on - strand, within HP15_264 at 254.188 kb on - strand, within HP15_264
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1 mM remove 251,187 + HP15_261 0.87 -0.2 251,195 - -0.7 251,210 + +0.1 251,235 + -0.2 251,311 + +1.6 251,322 + HP15_260 0.10 -1.1 251,575 - HP15_260 0.42 -0.0 251,605 + HP15_260 0.46 -0.8 251,624 + HP15_260 0.48 -0.9 251,629 + HP15_260 0.49 -0.4 251,637 - HP15_260 0.50 -0.8 251,670 + HP15_260 0.54 -1.1 251,832 + HP15_260 0.74 -0.9 251,832 + HP15_260 0.74 +0.1 251,941 - HP15_260 0.88 -1.1 251,965 - -0.4 251,993 - -0.4 252,044 - +0.2 252,044 - -0.6 252,085 - +0.1 252,179 + -0.4 252,187 - -0.3 252,319 + HP15_262 0.17 -0.4 252,361 - HP15_262 0.21 +0.5 252,469 + HP15_262 0.30 -0.5 252,519 + HP15_262 0.35 +0.1 252,681 - HP15_262 0.50 -0.5 252,793 - HP15_262 0.60 -0.5 252,909 + HP15_262 0.71 -0.6 252,958 - HP15_262 0.76 -0.7 253,007 - HP15_262 0.80 -0.5 253,068 + HP15_262 0.86 +0.2 253,076 - HP15_262 0.86 -0.7 253,140 + -0.0 253,280 - HP15_263 0.12 -0.5 253,526 - HP15_263 0.66 +0.1 253,550 + HP15_263 0.71 +0.3 253,625 + HP15_263 0.87 -0.4 253,676 + -0.4 253,705 - -0.4 253,819 - +0.4 253,908 + HP15_264 0.14 -1.8 253,908 + HP15_264 0.14 +0.2 253,914 + HP15_264 0.15 -0.2 253,922 - HP15_264 0.16 -0.5 254,031 + HP15_264 0.27 -0.5 254,039 - HP15_264 0.28 -0.6 254,054 - HP15_264 0.29 -0.4 254,111 - HP15_264 0.35 +0.1 254,188 - HP15_264 0.43 +0.9
Or see this region's nucleotide sequence