Experiment: m.b. Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2241 and HP15_2242 are separated by 42 nucleotides HP15_2242 and HP15_2243 are separated by 11 nucleotides HP15_2243 and HP15_2244 overlap by 4 nucleotides HP15_2244 and HP15_2245 are separated by 58 nucleotides
HP15_2241: HP15_2241 - transaldolase, at 2,362,342 to 2,363,307
_2241
HP15_2242: HP15_2242 - protein containing DUF1332, at 2,363,350 to 2,363,799
_2242
HP15_2243: HP15_2243 - phospho-2-dehydro-3-deoxyheptonate aldolase, at 2,363,811 to 2,364,938
_2243
HP15_2244: HP15_2244 - glycerophosphoryl diester phosphodiesterase, at 2,364,935 to 2,365,741
_2244
HP15_2245: HP15_2245 - soluble pyridine nucleotide transhydrogenase, at 2,365,800 to 2,367,191
_2245
Position (kb)
2363
2364
2365 Strain fitness (log2 ratio)
-1
0
1 at 2362.848 kb on + strand, within HP15_2241 at 2362.864 kb on + strand, within HP15_2241 at 2362.910 kb on - strand, within HP15_2241 at 2363.075 kb on + strand, within HP15_2241 at 2363.075 kb on + strand, within HP15_2241 at 2363.083 kb on - strand, within HP15_2241 at 2363.083 kb on - strand, within HP15_2241 at 2363.083 kb on - strand, within HP15_2241 at 2363.083 kb on - strand, within HP15_2241 at 2363.094 kb on - strand, within HP15_2241 at 2363.179 kb on + strand, within HP15_2241 at 2363.227 kb on - strand at 2363.247 kb on + strand at 2363.292 kb on + strand at 2363.322 kb on - strand at 2363.404 kb on + strand, within HP15_2242 at 2363.469 kb on + strand, within HP15_2242 at 2363.525 kb on + strand, within HP15_2242 at 2363.572 kb on - strand, within HP15_2242 at 2363.843 kb on + strand at 2363.916 kb on + strand at 2363.928 kb on + strand, within HP15_2243 at 2363.929 kb on + strand, within HP15_2243 at 2364.094 kb on - strand, within HP15_2243 at 2364.137 kb on + strand, within HP15_2243 at 2364.239 kb on + strand, within HP15_2243 at 2364.469 kb on + strand, within HP15_2243 at 2364.667 kb on + strand, within HP15_2243 at 2364.736 kb on + strand, within HP15_2243 at 2364.819 kb on + strand, within HP15_2243 at 2364.871 kb on - strand at 2365.025 kb on - strand, within HP15_2244 at 2365.081 kb on - strand, within HP15_2244 at 2365.126 kb on + strand, within HP15_2244 at 2365.126 kb on + strand, within HP15_2244 at 2365.667 kb on - strand at 2365.760 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1 mM remove 2,362,848 + HP15_2241 0.52 -0.2 2,362,864 + HP15_2241 0.54 +0.7 2,362,910 - HP15_2241 0.59 -0.5 2,363,075 + HP15_2241 0.76 +0.1 2,363,075 + HP15_2241 0.76 -0.8 2,363,083 - HP15_2241 0.77 -0.7 2,363,083 - HP15_2241 0.77 +0.0 2,363,083 - HP15_2241 0.77 -0.2 2,363,083 - HP15_2241 0.77 +0.8 2,363,094 - HP15_2241 0.78 +0.7 2,363,179 + HP15_2241 0.87 +0.2 2,363,227 - +0.0 2,363,247 + +0.2 2,363,292 + +0.0 2,363,322 - +0.0 2,363,404 + HP15_2242 0.12 +0.5 2,363,469 + HP15_2242 0.26 -0.1 2,363,525 + HP15_2242 0.39 +1.1 2,363,572 - HP15_2242 0.49 +1.5 2,363,843 + +0.1 2,363,916 + +0.0 2,363,928 + HP15_2243 0.10 -0.6 2,363,929 + HP15_2243 0.10 -0.3 2,364,094 - HP15_2243 0.25 +0.2 2,364,137 + HP15_2243 0.29 +0.2 2,364,239 + HP15_2243 0.38 -0.8 2,364,469 + HP15_2243 0.58 +0.1 2,364,667 + HP15_2243 0.76 +0.0 2,364,736 + HP15_2243 0.82 +0.4 2,364,819 + HP15_2243 0.89 -0.5 2,364,871 - +0.4 2,365,025 - HP15_2244 0.11 +0.3 2,365,081 - HP15_2244 0.18 +0.2 2,365,126 + HP15_2244 0.24 +0.8 2,365,126 + HP15_2244 0.24 +1.0 2,365,667 - +0.1 2,365,760 + +1.1
Or see this region's nucleotide sequence