Experiment: m.b. Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2160 and HP15_2161 are separated by 11 nucleotides HP15_2161 and HP15_2162 are separated by 7 nucleotides HP15_2162 and HP15_2163 overlap by 1 nucleotides
HP15_2160: HP15_2160 - transmembrane protein, at 2,267,468 to 2,267,743
_2160
HP15_2161: HP15_2161 - sugar ABC transporter, permease protein, at 2,267,755 to 2,268,564
_2161
HP15_2162: HP15_2162 - sugar ABC transporter, permease protein, at 2,268,572 to 2,269,438
_2162
HP15_2163: HP15_2163 - sugar ABC transporter, ATP-binding protein, at 2,269,438 to 2,270,538
_2163
Position (kb)
2268
2269
2270 Strain fitness (log2 ratio)
-1
0
1
2 at 2267.640 kb on + strand, within HP15_2160 at 2267.695 kb on + strand, within HP15_2160 at 2267.764 kb on + strand at 2267.801 kb on + strand at 2267.877 kb on + strand, within HP15_2161 at 2267.954 kb on + strand, within HP15_2161 at 2268.119 kb on + strand, within HP15_2161 at 2268.272 kb on + strand, within HP15_2161 at 2268.399 kb on - strand, within HP15_2161 at 2268.438 kb on + strand, within HP15_2161 at 2268.438 kb on + strand, within HP15_2161 at 2268.438 kb on + strand, within HP15_2161 at 2268.438 kb on + strand, within HP15_2161 at 2268.446 kb on - strand, within HP15_2161 at 2268.446 kb on - strand, within HP15_2161 at 2268.751 kb on + strand, within HP15_2162 at 2268.819 kb on + strand, within HP15_2162 at 2268.916 kb on + strand, within HP15_2162 at 2268.916 kb on + strand, within HP15_2162 at 2268.921 kb on + strand, within HP15_2162 at 2268.929 kb on - strand, within HP15_2162 at 2269.010 kb on + strand, within HP15_2162 at 2269.018 kb on - strand, within HP15_2162 at 2269.177 kb on - strand, within HP15_2162 at 2269.182 kb on + strand, within HP15_2162 at 2269.276 kb on + strand, within HP15_2162 at 2269.280 kb on + strand, within HP15_2162 at 2269.312 kb on - strand, within HP15_2162 at 2269.421 kb on + strand at 2269.467 kb on - strand at 2269.516 kb on - strand at 2269.573 kb on - strand, within HP15_2163 at 2269.612 kb on + strand, within HP15_2163 at 2269.846 kb on - strand, within HP15_2163 at 2269.856 kb on - strand, within HP15_2163 at 2269.902 kb on + strand, within HP15_2163 at 2269.928 kb on + strand, within HP15_2163 at 2269.929 kb on - strand, within HP15_2163 at 2270.012 kb on - strand, within HP15_2163 at 2270.041 kb on - strand, within HP15_2163 at 2270.064 kb on + strand, within HP15_2163 at 2270.366 kb on - strand, within HP15_2163 at 2270.404 kb on + strand, within HP15_2163 at 2270.412 kb on - strand, within HP15_2163
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1 mM remove 2,267,640 + HP15_2160 0.62 +0.3 2,267,695 + HP15_2160 0.82 +0.2 2,267,764 + +0.3 2,267,801 + +0.3 2,267,877 + HP15_2161 0.15 +0.4 2,267,954 + HP15_2161 0.25 +0.3 2,268,119 + HP15_2161 0.45 +0.9 2,268,272 + HP15_2161 0.64 +0.7 2,268,399 - HP15_2161 0.80 +0.8 2,268,438 + HP15_2161 0.84 +0.4 2,268,438 + HP15_2161 0.84 +0.5 2,268,438 + HP15_2161 0.84 +0.6 2,268,438 + HP15_2161 0.84 +0.1 2,268,446 - HP15_2161 0.85 +2.1 2,268,446 - HP15_2161 0.85 +0.6 2,268,751 + HP15_2162 0.21 +0.5 2,268,819 + HP15_2162 0.28 +0.9 2,268,916 + HP15_2162 0.40 +0.6 2,268,916 + HP15_2162 0.40 +0.9 2,268,921 + HP15_2162 0.40 +0.1 2,268,929 - HP15_2162 0.41 +0.4 2,269,010 + HP15_2162 0.51 +0.1 2,269,018 - HP15_2162 0.51 -0.6 2,269,177 - HP15_2162 0.70 +0.8 2,269,182 + HP15_2162 0.70 +0.8 2,269,276 + HP15_2162 0.81 +0.5 2,269,280 + HP15_2162 0.82 +0.2 2,269,312 - HP15_2162 0.85 -0.2 2,269,421 + +1.0 2,269,467 - -0.3 2,269,516 - -0.5 2,269,573 - HP15_2163 0.12 +0.9 2,269,612 + HP15_2163 0.16 +0.5 2,269,846 - HP15_2163 0.37 +1.0 2,269,856 - HP15_2163 0.38 -0.4 2,269,902 + HP15_2163 0.42 -0.2 2,269,928 + HP15_2163 0.45 -0.4 2,269,929 - HP15_2163 0.45 +1.1 2,270,012 - HP15_2163 0.52 +1.9 2,270,041 - HP15_2163 0.55 +0.4 2,270,064 + HP15_2163 0.57 +0.3 2,270,366 - HP15_2163 0.84 +1.3 2,270,404 + HP15_2163 0.88 -0.9 2,270,412 - HP15_2163 0.88 -0.1
Or see this region's nucleotide sequence