Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c02120

Experiment: m.b. Polymyxin B sulfate 0.0008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c02110 and PGA1_c02120 are separated by 164 nucleotidesPGA1_c02120 and PGA1_c02130 are separated by 5 nucleotidesPGA1_c02130 and PGA1_c02140 are separated by 99 nucleotidesPGA1_c02140 and PGA1_c02150 are separated by 26 nucleotides PGA1_c02110: PGA1_c02110 - tRNA 2-thiocytidine biosynthesis protein TtcA, at 194,519 to 195,406 _c02110 PGA1_c02120: PGA1_c02120 - hypothetical protein, at 195,571 to 196,143 _c02120 PGA1_c02130: PGA1_c02130 - conserved hypothetical protein YidD, at 196,149 to 196,421 _c02130 PGA1_c02140: PGA1_c02140 - putative ribonuclease P component, at 196,521 to 196,973 _c02140 PGA1_c02150: PGA1_c02150 - 50S ribosomal protein L34, at 197,000 to 197,134 _c02150 Position (kb) 195 196 197Strain fitness (log2 ratio) -2 -1 0 1 2at 194.596 kb on + strandat 194.604 kb on - strandat 194.625 kb on + strand, within PGA1_c02110at 194.633 kb on - strand, within PGA1_c02110at 194.659 kb on + strand, within PGA1_c02110at 194.669 kb on + strand, within PGA1_c02110at 194.719 kb on + strand, within PGA1_c02110at 194.946 kb on - strand, within PGA1_c02110at 194.946 kb on - strand, within PGA1_c02110at 194.946 kb on - strand, within PGA1_c02110at 194.946 kb on - strand, within PGA1_c02110at 194.975 kb on - strand, within PGA1_c02110at 194.991 kb on + strand, within PGA1_c02110at 194.992 kb on - strand, within PGA1_c02110at 195.025 kb on - strand, within PGA1_c02110at 195.128 kb on - strand, within PGA1_c02110at 195.208 kb on + strand, within PGA1_c02110at 195.208 kb on + strand, within PGA1_c02110at 195.208 kb on + strand, within PGA1_c02110at 195.208 kb on + strand, within PGA1_c02110at 195.208 kb on + strand, within PGA1_c02110at 195.208 kb on + strand, within PGA1_c02110at 195.208 kb on + strand, within PGA1_c02110at 195.208 kb on + strand, within PGA1_c02110at 195.208 kb on + strand, within PGA1_c02110at 195.208 kb on + strand, within PGA1_c02110at 195.208 kb on + strand, within PGA1_c02110at 195.208 kb on + strand, within PGA1_c02110at 195.208 kb on + strand, within PGA1_c02110at 195.208 kb on + strand, within PGA1_c02110at 195.208 kb on + strand, within PGA1_c02110at 195.208 kb on + strand, within PGA1_c02110at 195.208 kb on + strand, within PGA1_c02110at 195.208 kb on + strand, within PGA1_c02110at 195.208 kb on + strand, within PGA1_c02110at 195.208 kb on + strand, within PGA1_c02110at 195.208 kb on + strand, within PGA1_c02110at 195.210 kb on + strand, within PGA1_c02110at 195.210 kb on + strand, within PGA1_c02110at 195.216 kb on - strand, within PGA1_c02110at 195.216 kb on - strand, within PGA1_c02110at 195.216 kb on - strand, within PGA1_c02110at 195.216 kb on - strand, within PGA1_c02110at 195.216 kb on - strand, within PGA1_c02110at 195.216 kb on - strand, within PGA1_c02110at 195.216 kb on - strand, within PGA1_c02110at 195.216 kb on - strand, within PGA1_c02110at 195.216 kb on - strand, within PGA1_c02110at 195.216 kb on - strand, within PGA1_c02110at 195.216 kb on - strand, within PGA1_c02110at 195.216 kb on - strand, within PGA1_c02110at 195.216 kb on - strand, within PGA1_c02110at 195.216 kb on - strand, within PGA1_c02110at 195.216 kb on - strand, within PGA1_c02110at 195.216 kb on - strand, within PGA1_c02110at 195.216 kb on - strand, within PGA1_c02110at 195.216 kb on - strand, within PGA1_c02110at 195.216 kb on - strand, within PGA1_c02110at 195.216 kb on - strand, within PGA1_c02110at 195.216 kb on - strand, within PGA1_c02110at 195.216 kb on - strand, within PGA1_c02110at 195.216 kb on - strand, within PGA1_c02110at 195.216 kb on - strand, within PGA1_c02110at 195.216 kb on - strand, within PGA1_c02110at 195.216 kb on - strand, within PGA1_c02110at 195.216 kb on - strand, within PGA1_c02110at 195.216 kb on - strand, within PGA1_c02110at 195.216 kb on - strand, within PGA1_c02110at 195.216 kb on - strand, within PGA1_c02110at 195.218 kb on + strand, within PGA1_c02110at 195.255 kb on - strand, within PGA1_c02110at 195.272 kb on + strand, within PGA1_c02110at 195.415 kb on - strandat 195.475 kb on - strandat 195.486 kb on - strandat 195.530 kb on + strandat 195.556 kb on + strandat 195.556 kb on + strandat 195.562 kb on + strandat 195.562 kb on + strandat 195.564 kb on - strandat 195.570 kb on - strandat 195.617 kb on + strandat 195.672 kb on + strand, within PGA1_c02120at 195.768 kb on + strand, within PGA1_c02120at 195.768 kb on + strand, within PGA1_c02120at 195.776 kb on - strand, within PGA1_c02120at 195.776 kb on - strand, within PGA1_c02120at 195.776 kb on - strand, within PGA1_c02120at 195.778 kb on + strand, within PGA1_c02120at 195.778 kb on + strand, within PGA1_c02120at 195.786 kb on - strand, within PGA1_c02120at 195.786 kb on - strand, within PGA1_c02120at 195.788 kb on + strand, within PGA1_c02120at 195.796 kb on - strand, within PGA1_c02120at 195.821 kb on + strand, within PGA1_c02120at 195.821 kb on + strand, within PGA1_c02120at 195.821 kb on + strand, within PGA1_c02120at 195.829 kb on - strand, within PGA1_c02120at 195.829 kb on - strand, within PGA1_c02120at 195.829 kb on - strand, within PGA1_c02120at 195.857 kb on - strand, within PGA1_c02120at 195.866 kb on + strand, within PGA1_c02120at 195.891 kb on + strand, within PGA1_c02120at 195.942 kb on - strand, within PGA1_c02120at 195.971 kb on - strand, within PGA1_c02120at 195.979 kb on - strand, within PGA1_c02120at 196.060 kb on + strand, within PGA1_c02120at 196.084 kb on + strand, within PGA1_c02120at 196.100 kb on + strandat 196.108 kb on - strandat 196.118 kb on - strandat 196.127 kb on + strandat 196.147 kb on + strandat 196.198 kb on - strand, within PGA1_c02130at 196.211 kb on - strand, within PGA1_c02130at 196.360 kb on + strand, within PGA1_c02130at 196.373 kb on + strand, within PGA1_c02130at 196.417 kb on + strandat 196.423 kb on - strandat 196.448 kb on + strandat 196.466 kb on - strandat 196.495 kb on - strandat 196.504 kb on + strandat 196.504 kb on + strandat 196.504 kb on + strandat 196.512 kb on - strandat 196.977 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Polymyxin B sulfate 0.0008 mg/ml
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194,596 + +0.6
194,604 - +0.6
194,625 + PGA1_c02110 0.12 -1.3
194,633 - PGA1_c02110 0.13 -0.3
194,659 + PGA1_c02110 0.16 +1.0
194,669 + PGA1_c02110 0.17 +1.0
194,719 + PGA1_c02110 0.23 -0.4
194,946 - PGA1_c02110 0.48 +1.3
194,946 - PGA1_c02110 0.48 -0.0
194,946 - PGA1_c02110 0.48 +0.2
194,946 - PGA1_c02110 0.48 -0.7
194,975 - PGA1_c02110 0.51 +2.3
194,991 + PGA1_c02110 0.53 +0.3
194,992 - PGA1_c02110 0.53 -0.2
195,025 - PGA1_c02110 0.57 +1.3
195,128 - PGA1_c02110 0.69 -0.5
195,208 + PGA1_c02110 0.78 -1.3
195,208 + PGA1_c02110 0.78 -0.3
195,208 + PGA1_c02110 0.78 -1.1
195,208 + PGA1_c02110 0.78 -1.1
195,208 + PGA1_c02110 0.78 +0.5
195,208 + PGA1_c02110 0.78 -0.9
195,208 + PGA1_c02110 0.78 +0.3
195,208 + PGA1_c02110 0.78 +0.3
195,208 + PGA1_c02110 0.78 -0.1
195,208 + PGA1_c02110 0.78 +1.5
195,208 + PGA1_c02110 0.78 -0.1
195,208 + PGA1_c02110 0.78 +0.5
195,208 + PGA1_c02110 0.78 -0.9
195,208 + PGA1_c02110 0.78 +1.0
195,208 + PGA1_c02110 0.78 -0.3
195,208 + PGA1_c02110 0.78 -0.2
195,208 + PGA1_c02110 0.78 +0.4
195,208 + PGA1_c02110 0.78 -0.6
195,208 + PGA1_c02110 0.78 -0.8
195,208 + PGA1_c02110 0.78 +0.8
195,208 + PGA1_c02110 0.78 -1.9
195,210 + PGA1_c02110 0.78 +2.5
195,210 + PGA1_c02110 0.78 -1.0
195,216 - PGA1_c02110 0.78 +1.7
195,216 - PGA1_c02110 0.78 -0.1
195,216 - PGA1_c02110 0.78 +1.7
195,216 - PGA1_c02110 0.78 -0.7
195,216 - PGA1_c02110 0.78 -0.6
195,216 - PGA1_c02110 0.78 -1.1
195,216 - PGA1_c02110 0.78 -0.1
195,216 - PGA1_c02110 0.78 -0.5
195,216 - PGA1_c02110 0.78 +1.1
195,216 - PGA1_c02110 0.78 +0.7
195,216 - PGA1_c02110 0.78 +0.7
195,216 - PGA1_c02110 0.78 -1.8
195,216 - PGA1_c02110 0.78 -1.2
195,216 - PGA1_c02110 0.78 +0.4
195,216 - PGA1_c02110 0.78 +0.3
195,216 - PGA1_c02110 0.78 +0.5
195,216 - PGA1_c02110 0.78 +0.3
195,216 - PGA1_c02110 0.78 -0.3
195,216 - PGA1_c02110 0.78 -1.7
195,216 - PGA1_c02110 0.78 -1.9
195,216 - PGA1_c02110 0.78 -0.1
195,216 - PGA1_c02110 0.78 -0.9
195,216 - PGA1_c02110 0.78 +1.4
195,216 - PGA1_c02110 0.78 +1.1
195,216 - PGA1_c02110 0.78 -1.3
195,216 - PGA1_c02110 0.78 -0.9
195,216 - PGA1_c02110 0.78 -0.1
195,216 - PGA1_c02110 0.78 -0.7
195,216 - PGA1_c02110 0.78 +0.5
195,216 - PGA1_c02110 0.78 -0.9
195,218 + PGA1_c02110 0.79 +0.3
195,255 - PGA1_c02110 0.83 -0.0
195,272 + PGA1_c02110 0.85 -0.2
195,415 - -0.2
195,475 - -0.6
195,486 - +0.1
195,530 + +1.0
195,556 + -1.9
195,556 + -1.8
195,562 + -0.3
195,562 + +0.9
195,564 - -0.6
195,570 - -0.2
195,617 + +1.4
195,672 + PGA1_c02120 0.18 -1.7
195,768 + PGA1_c02120 0.34 -0.7
195,768 + PGA1_c02120 0.34 -0.7
195,776 - PGA1_c02120 0.36 -1.7
195,776 - PGA1_c02120 0.36 +0.7
195,776 - PGA1_c02120 0.36 +0.2
195,778 + PGA1_c02120 0.36 -0.6
195,778 + PGA1_c02120 0.36 -0.9
195,786 - PGA1_c02120 0.38 -0.2
195,786 - PGA1_c02120 0.38 +0.7
195,788 + PGA1_c02120 0.38 -1.3
195,796 - PGA1_c02120 0.39 +1.4
195,821 + PGA1_c02120 0.44 +0.9
195,821 + PGA1_c02120 0.44 -0.3
195,821 + PGA1_c02120 0.44 -1.1
195,829 - PGA1_c02120 0.45 +0.7
195,829 - PGA1_c02120 0.45 -0.9
195,829 - PGA1_c02120 0.45 -0.7
195,857 - PGA1_c02120 0.50 +1.4
195,866 + PGA1_c02120 0.51 -1.2
195,891 + PGA1_c02120 0.56 -1.2
195,942 - PGA1_c02120 0.65 -1.2
195,971 - PGA1_c02120 0.70 -0.9
195,979 - PGA1_c02120 0.71 -0.7
196,060 + PGA1_c02120 0.85 +0.7
196,084 + PGA1_c02120 0.90 +0.1
196,100 + -1.2
196,108 - +0.2
196,118 - -1.8
196,127 + +0.7
196,147 + +1.2
196,198 - PGA1_c02130 0.18 +0.7
196,211 - PGA1_c02130 0.23 +0.7
196,360 + PGA1_c02130 0.77 -0.8
196,373 + PGA1_c02130 0.82 +1.5
196,417 + +0.9
196,423 - -0.5
196,448 + -1.1
196,466 - +0.8
196,495 - +0.3
196,504 + -0.3
196,504 + +0.7
196,504 + -0.4
196,512 - +0.1
196,977 + +2.3

Or see this region's nucleotide sequence