Experiment: m.b. Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1844 and HP15_1845 overlap by 8 nucleotides HP15_1845 and HP15_1846 overlap by 4 nucleotides HP15_1846 and HP15_1847 are separated by 76 nucleotides
HP15_1844: HP15_1844 - DNA polymerase III, delta prime subunit, at 1,943,144 to 1,944,175
_1844
HP15_1845: HP15_1845 - transglutaminase domain protein, at 1,944,168 to 1,946,243
_1845
HP15_1846: HP15_1846 - protein containing DUF58, at 1,946,240 to 1,947,157
_1846
HP15_1847: HP15_1847 - hypothetical protein, at 1,947,234 to 1,947,374
_1847
Position (kb)
1944
1945
1946
1947 Strain fitness (log2 ratio)
-2
-1
0
1 at 1944.434 kb on + strand, within HP15_1845 at 1944.698 kb on - strand, within HP15_1845 at 1944.711 kb on - strand, within HP15_1845 at 1944.724 kb on + strand, within HP15_1845 at 1944.747 kb on + strand, within HP15_1845 at 1944.755 kb on - strand, within HP15_1845 at 1944.766 kb on - strand, within HP15_1845 at 1944.766 kb on - strand, within HP15_1845 at 1944.837 kb on + strand, within HP15_1845 at 1944.840 kb on - strand, within HP15_1845 at 1945.026 kb on + strand, within HP15_1845 at 1945.077 kb on - strand, within HP15_1845 at 1945.079 kb on + strand, within HP15_1845 at 1945.087 kb on - strand, within HP15_1845 at 1945.280 kb on - strand, within HP15_1845 at 1945.287 kb on + strand, within HP15_1845 at 1945.540 kb on - strand, within HP15_1845 at 1945.557 kb on + strand, within HP15_1845 at 1945.560 kb on - strand, within HP15_1845 at 1945.565 kb on - strand, within HP15_1845 at 1945.570 kb on - strand, within HP15_1845 at 1945.588 kb on - strand, within HP15_1845 at 1945.647 kb on - strand, within HP15_1845 at 1945.704 kb on - strand, within HP15_1845 at 1945.726 kb on - strand, within HP15_1845 at 1945.728 kb on + strand, within HP15_1845 at 1945.728 kb on + strand, within HP15_1845 at 1945.759 kb on - strand, within HP15_1845 at 1945.759 kb on - strand, within HP15_1845 at 1945.759 kb on - strand, within HP15_1845 at 1945.761 kb on + strand, within HP15_1845 at 1945.917 kb on + strand, within HP15_1845 at 1945.971 kb on + strand, within HP15_1845 at 1945.979 kb on - strand, within HP15_1845 at 1945.979 kb on - strand, within HP15_1845 at 1946.042 kb on + strand at 1946.042 kb on + strand at 1946.079 kb on + strand at 1946.218 kb on + strand at 1946.246 kb on - strand at 1946.257 kb on - strand at 1946.257 kb on - strand at 1946.262 kb on - strand at 1946.262 kb on - strand at 1946.337 kb on + strand, within HP15_1846 at 1946.549 kb on - strand, within HP15_1846 at 1946.684 kb on + strand, within HP15_1846 at 1946.741 kb on + strand, within HP15_1846 at 1946.776 kb on - strand, within HP15_1846 at 1946.908 kb on + strand, within HP15_1846 at 1946.910 kb on + strand, within HP15_1846 at 1946.957 kb on - strand, within HP15_1846 at 1947.049 kb on - strand, within HP15_1846
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1 mM remove 1,944,434 + HP15_1845 0.13 -0.4 1,944,698 - HP15_1845 0.26 +1.7 1,944,711 - HP15_1845 0.26 -0.2 1,944,724 + HP15_1845 0.27 +0.1 1,944,747 + HP15_1845 0.28 +0.1 1,944,755 - HP15_1845 0.28 -0.1 1,944,766 - HP15_1845 0.29 -0.4 1,944,766 - HP15_1845 0.29 -0.3 1,944,837 + HP15_1845 0.32 +1.2 1,944,840 - HP15_1845 0.32 +1.3 1,945,026 + HP15_1845 0.41 -0.2 1,945,077 - HP15_1845 0.44 +0.1 1,945,079 + HP15_1845 0.44 +1.4 1,945,087 - HP15_1845 0.44 -1.9 1,945,280 - HP15_1845 0.54 +0.1 1,945,287 + HP15_1845 0.54 +0.4 1,945,540 - HP15_1845 0.66 +0.6 1,945,557 + HP15_1845 0.67 +0.5 1,945,560 - HP15_1845 0.67 -1.3 1,945,565 - HP15_1845 0.67 +0.7 1,945,570 - HP15_1845 0.68 +0.9 1,945,588 - HP15_1845 0.68 +0.3 1,945,647 - HP15_1845 0.71 +0.9 1,945,704 - HP15_1845 0.74 -0.4 1,945,726 - HP15_1845 0.75 +0.4 1,945,728 + HP15_1845 0.75 -0.2 1,945,728 + HP15_1845 0.75 -0.0 1,945,759 - HP15_1845 0.77 +0.1 1,945,759 - HP15_1845 0.77 +0.7 1,945,759 - HP15_1845 0.77 -0.8 1,945,761 + HP15_1845 0.77 +0.7 1,945,917 + HP15_1845 0.84 +0.9 1,945,971 + HP15_1845 0.87 -0.4 1,945,979 - HP15_1845 0.87 +1.0 1,945,979 - HP15_1845 0.87 +0.2 1,946,042 + +0.6 1,946,042 + +0.8 1,946,079 + -0.6 1,946,218 + +0.2 1,946,246 - -0.1 1,946,257 - +0.1 1,946,257 - -0.4 1,946,262 - +0.6 1,946,262 - +0.3 1,946,337 + HP15_1846 0.11 +0.3 1,946,549 - HP15_1846 0.34 -0.3 1,946,684 + HP15_1846 0.48 -0.9 1,946,741 + HP15_1846 0.55 +0.6 1,946,776 - HP15_1846 0.58 -0.2 1,946,908 + HP15_1846 0.73 +0.2 1,946,910 + HP15_1846 0.73 +0.4 1,946,957 - HP15_1846 0.78 +0.3 1,947,049 - HP15_1846 0.88 +0.0
Or see this region's nucleotide sequence