Experiment: m.b. Polymyxin B sulfate 0.0008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c17460 and PGA1_c17470 overlap by 11 nucleotides PGA1_c17470 and PGA1_c17480 are separated by 260 nucleotides
PGA1_c17460: PGA1_c17460 - putative peptidase M23 family, at 1,829,791 to 1,831,122
_c17460
PGA1_c17470: PGA1_c17470 - Integral membrane protein CcmA involved in cell shape determination, at 1,831,112 to 1,831,654
_c17470
PGA1_c17480: PGA1_c17480 - hemolysin-type calcium-binding repeat-containing protein, at 1,831,915 to 1,833,159
_c17480
Position (kb)
1831
1832 Strain fitness (log2 ratio)
-2
-1
0
1 at 1830.151 kb on - strand, within PGA1_c17460 at 1830.610 kb on - strand, within PGA1_c17460 at 1830.631 kb on - strand, within PGA1_c17460 at 1831.076 kb on + strand at 1831.265 kb on + strand, within PGA1_c17470 at 1831.293 kb on - strand, within PGA1_c17470 at 1831.293 kb on - strand, within PGA1_c17470 at 1831.293 kb on - strand, within PGA1_c17470 at 1831.437 kb on + strand, within PGA1_c17470 at 1831.437 kb on + strand, within PGA1_c17470 at 1831.437 kb on + strand, within PGA1_c17470 at 1831.445 kb on - strand, within PGA1_c17470 at 1831.445 kb on - strand, within PGA1_c17470 at 1831.610 kb on + strand at 1831.655 kb on + strand at 1831.783 kb on - strand at 1831.791 kb on + strand at 1831.791 kb on + strand at 1831.793 kb on + strand at 1831.801 kb on - strand at 1831.801 kb on - strand at 1831.938 kb on + strand at 1831.944 kb on - strand at 1831.967 kb on - strand at 1831.996 kb on - strand at 1831.996 kb on - strand at 1832.056 kb on - strand, within PGA1_c17480 at 1832.123 kb on + strand, within PGA1_c17480 at 1832.123 kb on + strand, within PGA1_c17480 at 1832.126 kb on - strand, within PGA1_c17480 at 1832.170 kb on - strand, within PGA1_c17480 at 1832.284 kb on - strand, within PGA1_c17480 at 1832.304 kb on - strand, within PGA1_c17480 at 1832.323 kb on + strand, within PGA1_c17480 at 1832.323 kb on + strand, within PGA1_c17480 at 1832.331 kb on - strand, within PGA1_c17480 at 1832.365 kb on - strand, within PGA1_c17480 at 1832.498 kb on + strand, within PGA1_c17480 at 1832.638 kb on + strand, within PGA1_c17480 at 1832.646 kb on - strand, within PGA1_c17480 at 1832.648 kb on + strand, within PGA1_c17480
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Polymyxin B sulfate 0.0008 mg/ml remove 1,830,151 - PGA1_c17460 0.27 -1.5 1,830,610 - PGA1_c17460 0.61 -1.1 1,830,631 - PGA1_c17460 0.63 -1.5 1,831,076 + +0.5 1,831,265 + PGA1_c17470 0.28 -1.5 1,831,293 - PGA1_c17470 0.33 -2.3 1,831,293 - PGA1_c17470 0.33 +0.5 1,831,293 - PGA1_c17470 0.33 -1.5 1,831,437 + PGA1_c17470 0.60 -2.5 1,831,437 + PGA1_c17470 0.60 -2.5 1,831,437 + PGA1_c17470 0.60 -2.1 1,831,445 - PGA1_c17470 0.61 -1.8 1,831,445 - PGA1_c17470 0.61 -2.1 1,831,610 + -0.3 1,831,655 + +0.0 1,831,783 - -1.3 1,831,791 + -0.6 1,831,791 + -0.8 1,831,793 + -0.2 1,831,801 - -0.6 1,831,801 - +0.3 1,831,938 + +0.8 1,831,944 - +0.4 1,831,967 - +0.5 1,831,996 - +0.5 1,831,996 - +0.2 1,832,056 - PGA1_c17480 0.11 -2.3 1,832,123 + PGA1_c17480 0.17 -0.1 1,832,123 + PGA1_c17480 0.17 +0.7 1,832,126 - PGA1_c17480 0.17 -1.7 1,832,170 - PGA1_c17480 0.20 +0.3 1,832,284 - PGA1_c17480 0.30 +0.1 1,832,304 - PGA1_c17480 0.31 +0.6 1,832,323 + PGA1_c17480 0.33 -0.8 1,832,323 + PGA1_c17480 0.33 -0.1 1,832,331 - PGA1_c17480 0.33 -0.1 1,832,365 - PGA1_c17480 0.36 +0.2 1,832,498 + PGA1_c17480 0.47 +0.0 1,832,638 + PGA1_c17480 0.58 -0.6 1,832,646 - PGA1_c17480 0.59 -1.1 1,832,648 + PGA1_c17480 0.59 -0.8
Or see this region's nucleotide sequence