Experiment: m.b. Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1455 and HP15_1456 are separated by 230 nucleotides HP15_1456 and HP15_1457 are separated by 232 nucleotides HP15_1457 and HP15_1458 are separated by 73 nucleotides
HP15_1455: HP15_1455 - iron(III) ABC transporter, permease protein, at 1,530,464 to 1,532,077
_1455
HP15_1456: HP15_1456 - extracellular solute-binding protein, family 1, at 1,532,308 to 1,533,318
_1456
HP15_1457: HP15_1457 - HAD-superfamily subfamily IB, PSPase-like protein, at 1,533,551 to 1,533,790
_1457
HP15_1458: HP15_1458 - conserved hypothetical protein, at 1,533,864 to 1,534,457
_1458
Position (kb)
1532
1533
1534 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1 at 1531.727 kb on - strand, within HP15_1455 at 1531.766 kb on + strand, within HP15_1455 at 1531.767 kb on + strand, within HP15_1455 at 1531.947 kb on + strand at 1532.057 kb on + strand at 1532.057 kb on + strand at 1532.065 kb on - strand at 1532.065 kb on - strand at 1532.262 kb on + strand at 1532.371 kb on + strand at 1532.581 kb on + strand, within HP15_1456 at 1532.711 kb on + strand, within HP15_1456 at 1532.895 kb on + strand, within HP15_1456 at 1532.988 kb on - strand, within HP15_1456 at 1533.217 kb on - strand, within HP15_1456 at 1533.217 kb on - strand, within HP15_1456 at 1533.476 kb on + strand at 1533.533 kb on - strand at 1533.629 kb on + strand, within HP15_1457 at 1533.806 kb on + strand at 1533.825 kb on - strand at 1533.910 kb on + strand at 1533.918 kb on - strand at 1534.013 kb on - strand, within HP15_1458 at 1534.081 kb on - strand, within HP15_1458 at 1534.289 kb on + strand, within HP15_1458 at 1534.316 kb on + strand, within HP15_1458
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1 mM remove 1,531,727 - HP15_1455 0.78 -2.0 1,531,766 + HP15_1455 0.81 -4.3 1,531,767 + HP15_1455 0.81 -1.6 1,531,947 + -0.6 1,532,057 + -2.8 1,532,057 + -3.4 1,532,065 - -1.2 1,532,065 - -6.0 1,532,262 + -0.0 1,532,371 + -0.6 1,532,581 + HP15_1456 0.27 -3.5 1,532,711 + HP15_1456 0.40 -2.2 1,532,895 + HP15_1456 0.58 -1.2 1,532,988 - HP15_1456 0.67 -2.8 1,533,217 - HP15_1456 0.90 -3.2 1,533,217 - HP15_1456 0.90 -1.9 1,533,476 + -0.5 1,533,533 - +0.9 1,533,629 + HP15_1457 0.33 +0.2 1,533,806 + +0.1 1,533,825 - +0.1 1,533,910 + +0.8 1,533,918 - -0.6 1,534,013 - HP15_1458 0.25 +0.5 1,534,081 - HP15_1458 0.37 -0.5 1,534,289 + HP15_1458 0.72 -0.8 1,534,316 + HP15_1458 0.76 +0.0
Or see this region's nucleotide sequence