Strain Fitness in Shewanella amazonensis SB2B around Sama_2440

Experiment: D,L-Lactate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D,L-Lactate
2,934,391	+		Sama_2439	0.45	+2.3
2,934,392	-		Sama_2439	0.45	-1.4
2,934,558	+		Sama_2439	0.55	-0.2
2,934,559	-		Sama_2439	0.55	+0.9
2,934,573	+		Sama_2439	0.56	+1.1
2,934,573	+		Sama_2439	0.56	+0.4
2,934,605	+		Sama_2439	0.58	+2.1
2,934,605	+		Sama_2439	0.58	+0.3
2,934,606	-		Sama_2439	0.58	+0.8
2,934,606	-		Sama_2439	0.58	-1.8
2,934,606	-		Sama_2439	0.58	-0.2
2,934,645	+		Sama_2439	0.61	+1.2
2,934,676	+		Sama_2439	0.63	+0.6
2,934,677	-		Sama_2439	0.63	-1.4
2,934,735	-		Sama_2439	0.66	-1.7
2,934,735	-		Sama_2439	0.66	-1.7
2,935,004	-		Sama_2439	0.82	+0.3
2,935,067	+		Sama_2439	0.86	+4.5
2,935,251	+				+5.4
2,935,251	+				+6.0
2,935,252	-				-1.7
2,935,252	-				-1.4
2,935,252	-				-1.6
2,935,266	+				+4.4
2,935,266	+				+5.3
2,935,267	-				-0.9
2,935,267	-				+0.3
2,935,290	-				+1.8
2,935,290	-				+0.1
2,935,306	+				+5.6
2,935,368	+				+4.8
2,935,369	-				-0.2
2,935,369	-				-0.2
2,935,369	-				-0.8
2,935,369	-				-1.3
2,935,380	+				-0.9
2,935,380	+				-1.2
2,935,380	+				-0.6
2,935,380	+				+1.4
2,935,380	+				-0.9
2,935,380	+				-0.2
2,935,380	+				-1.5
2,935,380	+				-1.8
2,935,380	+				-1.5
2,935,380	+				-0.2
2,935,380	+				-0.2
2,935,380	+				-2.8
2,935,380	+				-2.1
2,935,380	+				-2.1
2,935,381	-				-2.2
2,935,381	-				-0.5
2,935,381	-				-1.8
2,935,381	-				-1.8
2,935,381	-				-1.8
2,935,381	-				-1.0
2,935,381	-				-1.2
2,935,381	-				-1.5
2,935,381	-				-2.1
2,935,381	-				-2.1
2,935,381	-				-1.2
2,935,489	+				-0.8
2,935,490	-				-1.9
2,935,511	+				-1.5
2,935,511	+				-1.8
2,935,542	-				-1.2
2,935,802	+		Sama_2440	0.15	-0.2
2,935,802	+		Sama_2440	0.15	-0.7
2,935,802	+		Sama_2440	0.15	-0.2
2,935,802	+		Sama_2440	0.15	-1.7
2,935,802	+		Sama_2440	0.15	-1.2
2,935,802	+		Sama_2440	0.15	-0.6
2,935,803	-		Sama_2440	0.15	-0.4
2,935,803	-		Sama_2440	0.15	-2.7
2,935,803	-		Sama_2440	0.15	-0.2
2,935,803	-		Sama_2440	0.15	-0.8
2,935,862	-		Sama_2440	0.17	-0.7
2,936,047	-		Sama_2440	0.24	-2.4
2,936,062	+		Sama_2440	0.24	-1.5
2,936,062	+		Sama_2440	0.24	-1.2
2,936,136	+		Sama_2440	0.27	-0.8
2,936,136	+		Sama_2440	0.27	-1.8
2,936,164	+		Sama_2440	0.28	-1.8
2,936,164	+		Sama_2440	0.28	+0.8
2,936,165	-		Sama_2440	0.28	-2.6
2,936,165	-		Sama_2440	0.28	-2.0
2,936,190	+		Sama_2440	0.29	-1.1
2,936,316	+		Sama_2440	0.33	-2.8
2,936,413	+		Sama_2440	0.37	-2.0
2,936,491	+		Sama_2440	0.40	-3.4
2,936,492	-		Sama_2440	0.40	-1.9
2,936,492	-		Sama_2440	0.40	-2.0
2,936,500	+		Sama_2440	0.40	-2.2
2,936,666	-		Sama_2440	0.46	-0.2
2,936,666	-		Sama_2440	0.46	-0.4
2,936,686	-		Sama_2440	0.46	-1.2
2,936,686	-		Sama_2440	0.46	-1.2
2,936,697	+		Sama_2440	0.47	-0.9
2,936,697	+		Sama_2440	0.47	-2.1
2,936,697	+		Sama_2440	0.47	-1.8
2,936,698	-		Sama_2440	0.47	-0.2
2,936,698	-		Sama_2440	0.47	-2.5
2,936,698	-		Sama_2440	0.47	-1.8
2,936,751	+		Sama_2440	0.49	-0.2
2,936,752	-		Sama_2440	0.49	-1.6
2,936,785	+		Sama_2440	0.50	-1.7
2,936,786	-		Sama_2440	0.50	-1.2
2,936,866	+		Sama_2440	0.53	-0.2
2,936,866	+		Sama_2440	0.53	-3.4
2,936,866	+		Sama_2440	0.53	-2.8
2,936,867	-		Sama_2440	0.53	-0.2
2,936,867	-		Sama_2440	0.53	-1.0
2,936,867	-		Sama_2440	0.53	-2.0
2,936,867	-		Sama_2440	0.53	-1.4
2,936,868	+		Sama_2440	0.53	+0.3
2,936,927	+		Sama_2440	0.55	-0.2
2,936,928	-		Sama_2440	0.55	-3.2
2,936,985	-		Sama_2440	0.57	-2.8
2,937,007	-		Sama_2440	0.58	-0.7
2,937,072	+		Sama_2440	0.60	-0.8
2,937,073	-		Sama_2440	0.60	-1.2
2,937,154	+		Sama_2440	0.63	-2.6
2,937,155	-		Sama_2440	0.63	-1.0
2,937,155	-		Sama_2440	0.63	-1.8
2,937,155	-		Sama_2440	0.63	-1.9
2,937,192	+		Sama_2440	0.64	-2.6
2,937,193	-		Sama_2440	0.65	-1.8
2,937,237	+		Sama_2440	0.66	-1.2
2,937,253	+		Sama_2440	0.67	-0.6
2,937,253	+		Sama_2440	0.67	-2.6
2,937,254	-		Sama_2440	0.67	-1.7
2,937,255	+		Sama_2440	0.67	-0.2
2,937,255	+		Sama_2440	0.67	-3.0
2,937,255	+		Sama_2440	0.67	-1.0
2,937,256	-		Sama_2440	0.67	-1.2
2,937,256	-		Sama_2440	0.67	-1.0
2,937,256	-		Sama_2440	0.67	-3.2
2,937,323	+		Sama_2440	0.69	-1.8
2,937,323	+		Sama_2440	0.69	-0.6
2,937,323	+		Sama_2440	0.69	-1.2
2,937,323	+		Sama_2440	0.69	-1.2
2,937,323	+		Sama_2440	0.69	-1.7
2,937,323	+		Sama_2440	0.69	+1.3
2,937,324	-		Sama_2440	0.69	-1.6
2,937,324	-		Sama_2440	0.69	-3.3
2,937,339	+		Sama_2440	0.70	-2.7
2,937,340	-		Sama_2440	0.70	-2.1
2,937,399	-		Sama_2440	0.72	-0.2
2,937,422	+		Sama_2440	0.73	-0.8
2,937,422	+		Sama_2440	0.73	-0.8
2,937,422	+		Sama_2440	0.73	-1.5
2,937,423	-		Sama_2440	0.73	-0.8
2,937,423	-		Sama_2440	0.73	-1.0
2,937,423	-		Sama_2440	0.73	-0.2
2,937,506	-		Sama_2440	0.76	-0.2
2,937,506	-		Sama_2440	0.76	-3.2
2,937,506	-		Sama_2440	0.76	+1.8
2,937,584	+		Sama_2440	0.78	+1.8
2,937,584	+		Sama_2440	0.78	+0.2
2,937,585	-		Sama_2440	0.78	-0.6
2,937,608	-		Sama_2440	0.79	-1.2
2,937,742	-		Sama_2440	0.84	-1.2
2,937,845	+		Sama_2440	0.88	+0.6
2,937,845	+		Sama_2440	0.88	-1.8
2,937,845	+		Sama_2440	0.88	-0.2
2,937,845	+		Sama_2440	0.88	-2.0
2,937,845	+		Sama_2440	0.88	-1.7
2,937,846	-		Sama_2440	0.88	-0.2
2,937,846	-		Sama_2440	0.88	-1.0
2,937,949	-				-1.8
2,937,997	+				-0.2
2,937,997	+				-1.1
2,938,018	+				-3.2
2,938,018	+				-1.4
2,938,019	-				-1.6
2,938,019	-				-1.5
2,938,019	-				-1.9
2,938,091	-				-0.6
2,938,093	+				-2.0
2,938,093	+				-1.5
2,938,093	+				+0.0
2,938,093	+				-1.1
2,938,093	+				-1.7
2,938,093	+				-1.2
2,938,093	+				-1.6
2,938,094	-				-1.6
2,938,094	-				-0.2
2,938,104	+				-0.1
2,938,104	+				-0.2
2,938,104	+				-0.6
2,938,105	-				-1.0
2,938,105	-				-0.6
2,938,105	-				-0.8
2,938,105	-				-1.6
2,938,105	-				-1.6
2,938,137	+				-2.0
2,938,138	-				-3.1
2,938,138	-				-1.2
2,938,138	-				-1.0
2,938,159	+				-0.2
2,938,159	+				-1.8
2,938,159	+				-1.2
2,938,216	-				-1.2
2,938,312	-				-3.2
2,938,317	+				-1.8
2,938,318	-				-1.8
2,938,340	+				+0.0
2,938,340	+				+0.4
2,938,341	-				-2.6
2,938,341	-				-2.2
2,938,342	+				-1.8
2,938,342	+				-0.5
2,938,356	-				-2.1
2,938,356	-				-3.0
2,938,362	+				-0.2
2,938,362	+				+1.3
2,938,362	+				-1.2
2,938,362	+				+0.3
2,938,377	+				+0.4
2,938,377	+				+0.2
2,938,378	-				-0.8
2,938,378	-				-3.2
2,938,380	+				-0.4
2,938,380	+				+0.6
2,938,552	-		Sama_2441	0.18	-3.8
2,938,552	-		Sama_2441	0.18	-3.2
2,938,552	-		Sama_2441	0.18	-3.9
2,938,552	-		Sama_2441	0.18	-3.2
2,938,552	-		Sama_2441	0.18	-2.8
2,938,552	-		Sama_2441	0.18	-0.2
2,938,552	-		Sama_2441	0.18	-1.0
2,938,751	+		Sama_2441	0.45	-2.6
2,938,759	+		Sama_2441	0.46	-4.1
2,938,760	+		Sama_2441	0.46	-2.0
2,938,760	+		Sama_2441	0.46	-0.8
2,938,760	+		Sama_2441	0.46	-3.4
2,938,760	+		Sama_2441	0.46	-2.6
2,938,761	-		Sama_2441	0.46	-3.8
2,938,780	-		Sama_2441	0.49	-0.2
2,938,833	+		Sama_2441	0.56	+1.3
2,938,833	+		Sama_2441	0.56	-2.2
2,938,834	-		Sama_2441	0.56	-2.6
2,938,834	-		Sama_2441	0.56	-2.7
2,938,834	-		Sama_2441	0.56	-3.0
2,938,862	-		Sama_2441	0.60	-1.8
2,938,862	-		Sama_2441	0.60	-2.0
2,938,862	-		Sama_2441	0.60	-2.2
2,938,876	+		Sama_2441	0.62	-1.0
2,938,895	+		Sama_2441	0.64	-4.2
2,938,896	-		Sama_2441	0.64	-3.0
2,938,896	-		Sama_2441	0.64	-3.2
2,938,896	-		Sama_2441	0.64	-1.8
2,938,917	-		Sama_2441	0.67	-2.8
2,938,927	+		Sama_2441	0.69	-2.6
2,939,035	-		Sama_2441	0.83	-3.0
2,939,047	+		Sama_2441	0.85	-3.4
2,939,047	+		Sama_2441	0.85	-3.0
2,939,047	+		Sama_2441	0.85	-1.0
2,939,047	+		Sama_2441	0.85	-1.8
2,939,048	-		Sama_2441	0.85	-3.0
2,939,048	-		Sama_2441	0.85	-3.0
2,939,048	-		Sama_2441	0.85	-2.2
2,939,048	-		Sama_2441	0.85	-4.0
2,939,048	-		Sama_2441	0.85	-1.8
2,939,048	-		Sama_2441	0.85	-3.2
2,939,048	-		Sama_2441	0.85	-2.6
2,939,092	-				-3.8
2,939,158	+				-0.2
2,939,158	+				-2.8