Experiment: Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS26730 and BPHYT_RS26735 are separated by 162 nucleotides BPHYT_RS26735 and BPHYT_RS26740 are separated by 28 nucleotides BPHYT_RS26740 and BPHYT_RS26745 are separated by 57 nucleotides
BPHYT_RS26730: BPHYT_RS26730 - membrane protein, at 1,566,225 to 1,568,177
_RS26730
BPHYT_RS26735: BPHYT_RS26735 - FAD-dependent oxidoreductase, at 1,568,340 to 1,570,091
_RS26735
BPHYT_RS26740: BPHYT_RS26740 - hypothetical protein, at 1,570,120 to 1,570,311
_RS26740
BPHYT_RS26745: BPHYT_RS26745 - 2-dehydropantoate 2-reductase, at 1,570,369 to 1,571,352
_RS26745
Position (kb) 1568
1569
1570
1571 Strain fitness (log2 ratio) -2
-1
0
1 at 1567.966 kb on - strand, within BPHYT_RS26730 at 1568.193 kb on + strand at 1568.382 kb on + strand at 1568.382 kb on + strand at 1568.734 kb on - strand, within BPHYT_RS26735 at 1568.994 kb on + strand, within BPHYT_RS26735 at 1568.995 kb on - strand, within BPHYT_RS26735 at 1569.061 kb on - strand, within BPHYT_RS26735 at 1569.136 kb on - strand, within BPHYT_RS26735 at 1569.261 kb on + strand, within BPHYT_RS26735 at 1569.447 kb on - strand, within BPHYT_RS26735 at 1569.451 kb on - strand, within BPHYT_RS26735 at 1569.451 kb on - strand, within BPHYT_RS26735 at 1569.451 kb on - strand, within BPHYT_RS26735 at 1569.879 kb on - strand, within BPHYT_RS26735 at 1570.093 kb on - strand at 1570.098 kb on + strand at 1570.201 kb on + strand, within BPHYT_RS26740 at 1570.370 kb on + strand at 1571.080 kb on + strand, within BPHYT_RS26745
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days remove 1,567,966 - BPHYT_RS26730 0.89 -0.1 1,568,193 + -1.0 1,568,382 + -2.4 1,568,382 + +0.5 1,568,734 - BPHYT_RS26735 0.22 +0.3 1,568,994 + BPHYT_RS26735 0.37 +1.4 1,568,995 - BPHYT_RS26735 0.37 +0.7 1,569,061 - BPHYT_RS26735 0.41 +0.5 1,569,136 - BPHYT_RS26735 0.45 -0.5 1,569,261 + BPHYT_RS26735 0.53 -0.1 1,569,447 - BPHYT_RS26735 0.63 +0.4 1,569,451 - BPHYT_RS26735 0.63 -0.6 1,569,451 - BPHYT_RS26735 0.63 +0.2 1,569,451 - BPHYT_RS26735 0.63 -1.7 1,569,879 - BPHYT_RS26735 0.88 -0.8 1,570,093 - -0.7 1,570,098 + -0.7 1,570,201 + BPHYT_RS26740 0.42 -1.5 1,570,370 + +1.1 1,571,080 + BPHYT_RS26745 0.72 +0.1
Or see this region's nucleotide sequence