Experiment: Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS21540 and BPHYT_RS21545 are separated by 92 nucleotides BPHYT_RS21545 and BPHYT_RS21550 are separated by 168 nucleotides BPHYT_RS21550 and BPHYT_RS21555 are separated by 210 nucleotides
BPHYT_RS21540: BPHYT_RS21540 - 4Fe-4S ferredoxin, at 392,317 to 392,613
_RS21540
BPHYT_RS21545: BPHYT_RS21545 - SAM-dependent methyltransferase, at 392,706 to 393,422
_RS21545
BPHYT_RS21550: BPHYT_RS21550 - hypothetical protein, at 393,591 to 394,109
_RS21550
BPHYT_RS21555: BPHYT_RS21555 - beta alanine--pyruvate aminotransferase, at 394,320 to 395,648
_RS21555
Position (kb) 393
394
395 Strain fitness (log2 ratio) -2
-1
0
1
2 at 392.627 kb on + strand at 392.669 kb on - strand at 392.705 kb on + strand at 392.829 kb on + strand, within BPHYT_RS21545 at 392.964 kb on - strand, within BPHYT_RS21545 at 393.095 kb on + strand, within BPHYT_RS21545 at 393.144 kb on + strand, within BPHYT_RS21545 at 393.144 kb on + strand, within BPHYT_RS21545 at 393.224 kb on - strand, within BPHYT_RS21545 at 393.238 kb on - strand, within BPHYT_RS21545 at 393.284 kb on + strand, within BPHYT_RS21545 at 393.285 kb on - strand, within BPHYT_RS21545 at 393.306 kb on + strand, within BPHYT_RS21545 at 393.306 kb on + strand, within BPHYT_RS21545 at 393.306 kb on + strand, within BPHYT_RS21545 at 393.333 kb on + strand, within BPHYT_RS21545 at 394.113 kb on - strand at 394.220 kb on + strand at 394.241 kb on + strand at 394.321 kb on + strand at 394.322 kb on - strand at 394.633 kb on + strand, within BPHYT_RS21555 at 394.684 kb on + strand, within BPHYT_RS21555 at 394.837 kb on + strand, within BPHYT_RS21555
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days remove 392,627 + -2.4 392,669 - +0.6 392,705 + +0.3 392,829 + BPHYT_RS21545 0.17 -1.1 392,964 - BPHYT_RS21545 0.36 -0.0 393,095 + BPHYT_RS21545 0.54 +0.1 393,144 + BPHYT_RS21545 0.61 -0.8 393,144 + BPHYT_RS21545 0.61 -0.4 393,224 - BPHYT_RS21545 0.72 +0.8 393,238 - BPHYT_RS21545 0.74 -1.8 393,284 + BPHYT_RS21545 0.81 -0.4 393,285 - BPHYT_RS21545 0.81 +0.0 393,306 + BPHYT_RS21545 0.84 -0.2 393,306 + BPHYT_RS21545 0.84 -0.1 393,306 + BPHYT_RS21545 0.84 +2.2 393,333 + BPHYT_RS21545 0.87 -0.3 394,113 - -0.4 394,220 + +1.0 394,241 + +0.2 394,321 + -1.6 394,322 - -0.4 394,633 + BPHYT_RS21555 0.24 +0.0 394,684 + BPHYT_RS21555 0.27 -0.7 394,837 + BPHYT_RS21555 0.39 +0.4
Or see this region's nucleotide sequence