Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS20155

Experiment: Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS20150 and BPHYT_RS20155 overlap by 4 nucleotidesBPHYT_RS20155 and BPHYT_RS20160 overlap by 4 nucleotides BPHYT_RS20150: BPHYT_RS20150 - glycosyl transferase family 1, at 63,055 to 64,146 _RS20150 BPHYT_RS20155: BPHYT_RS20155 - hypothetical protein, at 64,143 to 65,402 _RS20155 BPHYT_RS20160: BPHYT_RS20160 - hypothetical protein, at 65,399 to 66,730 _RS20160 Position (kb) 64 65 66Strain fitness (log2 ratio) -1 0 1 2at 63.376 kb on + strand, within BPHYT_RS20150at 63.756 kb on + strand, within BPHYT_RS20150at 63.756 kb on + strand, within BPHYT_RS20150at 64.133 kb on - strandat 64.381 kb on - strand, within BPHYT_RS20155at 64.742 kb on - strand, within BPHYT_RS20155at 65.842 kb on + strand, within BPHYT_RS20160at 65.858 kb on - strand, within BPHYT_RS20160at 66.288 kb on + strand, within BPHYT_RS20160

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days
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63,376 + BPHYT_RS20150 0.29 +1.3
63,756 + BPHYT_RS20150 0.64 +0.2
63,756 + BPHYT_RS20150 0.64 -1.1
64,133 - -0.3
64,381 - BPHYT_RS20155 0.19 +2.2
64,742 - BPHYT_RS20155 0.48 +0.2
65,842 + BPHYT_RS20160 0.33 -0.1
65,858 - BPHYT_RS20160 0.34 -0.3
66,288 + BPHYT_RS20160 0.67 +1.2

Or see this region's nucleotide sequence