Experiment: Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS19635 and BPHYT_RS19640 are separated by 28 nucleotides BPHYT_RS19640 and BPHYT_RS19645 overlap by 4 nucleotides BPHYT_RS19645 and BPHYT_RS19650 are separated by 34 nucleotides
BPHYT_RS19635: BPHYT_RS19635 - general secretion pathway protein K, at 4,417,979 to 4,419,274
_RS19635
BPHYT_RS19640: BPHYT_RS19640 - general secretion pathway protein L, at 4,419,303 to 4,420,730
_RS19640
BPHYT_RS19645: BPHYT_RS19645 - general secretion pathway protein M, at 4,420,727 to 4,421,230
_RS19645
BPHYT_RS19650: BPHYT_RS19650 - general secretion pathway protein N, at 4,421,265 to 4,422,044
_RS19650
Position (kb) 4419
4420
4421 Strain fitness (log2 ratio) -1
0
1
2
3 at 4418.423 kb on + strand, within BPHYT_RS19635 at 4418.423 kb on + strand, within BPHYT_RS19635 at 4418.437 kb on - strand, within BPHYT_RS19635 at 4418.497 kb on - strand, within BPHYT_RS19635 at 4418.497 kb on - strand, within BPHYT_RS19635 at 4418.523 kb on - strand, within BPHYT_RS19635 at 4418.527 kb on - strand, within BPHYT_RS19635 at 4418.631 kb on - strand, within BPHYT_RS19635 at 4418.631 kb on - strand, within BPHYT_RS19635 at 4419.081 kb on + strand, within BPHYT_RS19635 at 4419.081 kb on + strand, within BPHYT_RS19635 at 4419.082 kb on - strand, within BPHYT_RS19635 at 4419.155 kb on + strand at 4419.155 kb on + strand at 4419.156 kb on - strand at 4419.241 kb on + strand at 4419.242 kb on - strand at 4419.270 kb on + strand at 4419.270 kb on + strand at 4419.270 kb on + strand at 4419.270 kb on + strand at 4419.270 kb on + strand at 4419.271 kb on - strand at 4419.271 kb on - strand at 4419.271 kb on - strand at 4419.271 kb on - strand at 4419.323 kb on - strand at 4419.323 kb on - strand at 4419.323 kb on - strand at 4419.668 kb on + strand, within BPHYT_RS19640 at 4419.669 kb on - strand, within BPHYT_RS19640 at 4419.669 kb on - strand, within BPHYT_RS19640 at 4419.669 kb on - strand, within BPHYT_RS19640 at 4420.091 kb on - strand, within BPHYT_RS19640 at 4420.091 kb on - strand, within BPHYT_RS19640 at 4420.161 kb on + strand, within BPHYT_RS19640 at 4420.418 kb on + strand, within BPHYT_RS19640 at 4420.418 kb on + strand, within BPHYT_RS19640 at 4420.419 kb on - strand, within BPHYT_RS19640 at 4420.419 kb on - strand, within BPHYT_RS19640 at 4420.591 kb on - strand at 4421.271 kb on + strand at 4421.271 kb on + strand at 4421.272 kb on - strand at 4421.272 kb on - strand at 4421.624 kb on + strand, within BPHYT_RS19650 at 4421.624 kb on + strand, within BPHYT_RS19650
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days remove 4,418,423 + BPHYT_RS19635 0.34 +0.4 4,418,423 + BPHYT_RS19635 0.34 -0.2 4,418,437 - BPHYT_RS19635 0.35 -1.6 4,418,497 - BPHYT_RS19635 0.40 -1.6 4,418,497 - BPHYT_RS19635 0.40 +1.2 4,418,523 - BPHYT_RS19635 0.42 -0.3 4,418,527 - BPHYT_RS19635 0.42 +1.9 4,418,631 - BPHYT_RS19635 0.50 -0.2 4,418,631 - BPHYT_RS19635 0.50 -0.1 4,419,081 + BPHYT_RS19635 0.85 +0.3 4,419,081 + BPHYT_RS19635 0.85 +0.6 4,419,082 - BPHYT_RS19635 0.85 +0.2 4,419,155 + -0.8 4,419,155 + -0.4 4,419,156 - -0.9 4,419,241 + -0.2 4,419,242 - +0.2 4,419,270 + -1.2 4,419,270 + +2.6 4,419,270 + -0.5 4,419,270 + +2.8 4,419,270 + +0.5 4,419,271 - -0.5 4,419,271 - +1.4 4,419,271 - +1.4 4,419,271 - +1.4 4,419,323 - -0.8 4,419,323 - -0.1 4,419,323 - -0.3 4,419,668 + BPHYT_RS19640 0.26 -0.5 4,419,669 - BPHYT_RS19640 0.26 +0.6 4,419,669 - BPHYT_RS19640 0.26 +0.4 4,419,669 - BPHYT_RS19640 0.26 -0.2 4,420,091 - BPHYT_RS19640 0.55 -0.7 4,420,091 - BPHYT_RS19640 0.55 -0.2 4,420,161 + BPHYT_RS19640 0.60 -0.4 4,420,418 + BPHYT_RS19640 0.78 -0.2 4,420,418 + BPHYT_RS19640 0.78 -0.1 4,420,419 - BPHYT_RS19640 0.78 -0.1 4,420,419 - BPHYT_RS19640 0.78 -0.2 4,420,591 - -0.7 4,421,271 + -0.1 4,421,271 + +0.2 4,421,272 - -0.2 4,421,272 - -0.1 4,421,624 + BPHYT_RS19650 0.46 -1.0 4,421,624 + BPHYT_RS19650 0.46 -0.1
Or see this region's nucleotide sequence