Experiment: Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS19490 and BPHYT_RS19495 are separated by 298 nucleotides BPHYT_RS19495 and BPHYT_RS19500 are separated by 138 nucleotides
BPHYT_RS19490: BPHYT_RS19490 - amino acid ABC transporter ATP-binding protein, at 4,385,603 to 4,386,382
_RS19490
BPHYT_RS19495: BPHYT_RS19495 - choline dehydrogenase, at 4,386,681 to 4,388,393
_RS19495
BPHYT_RS19500: BPHYT_RS19500 - methylmalonate-semialdehyde dehydrogenase, at 4,388,532 to 4,390,070
_RS19500
Position (kb) 4386
4387
4388
4389 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4385.686 kb on - strand, within BPHYT_RS19490 at 4385.725 kb on + strand, within BPHYT_RS19490 at 4386.394 kb on + strand at 4386.401 kb on + strand at 4386.448 kb on + strand at 4386.481 kb on + strand at 4386.502 kb on - strand at 4386.576 kb on + strand at 4386.576 kb on + strand at 4386.576 kb on + strand at 4386.581 kb on + strand at 4386.581 kb on + strand at 4386.582 kb on - strand at 4386.614 kb on + strand at 4386.614 kb on + strand at 4386.615 kb on - strand at 4386.806 kb on + strand at 4386.807 kb on - strand at 4386.807 kb on - strand at 4386.807 kb on - strand at 4386.997 kb on + strand, within BPHYT_RS19495 at 4386.998 kb on - strand, within BPHYT_RS19495 at 4387.118 kb on - strand, within BPHYT_RS19495 at 4387.379 kb on - strand, within BPHYT_RS19495 at 4387.452 kb on - strand, within BPHYT_RS19495 at 4387.454 kb on - strand, within BPHYT_RS19495 at 4387.454 kb on - strand, within BPHYT_RS19495 at 4387.633 kb on + strand, within BPHYT_RS19495 at 4387.634 kb on - strand, within BPHYT_RS19495 at 4387.703 kb on - strand, within BPHYT_RS19495 at 4388.047 kb on + strand, within BPHYT_RS19495 at 4388.071 kb on + strand, within BPHYT_RS19495 at 4388.072 kb on - strand, within BPHYT_RS19495 at 4388.201 kb on - strand, within BPHYT_RS19495 at 4388.233 kb on + strand at 4388.234 kb on - strand at 4388.338 kb on + strand at 4388.339 kb on - strand at 4388.386 kb on + strand at 4388.461 kb on + strand at 4388.533 kb on + strand at 4388.615 kb on - strand at 4388.639 kb on - strand at 4389.206 kb on - strand, within BPHYT_RS19500 at 4389.326 kb on - strand, within BPHYT_RS19500 at 4389.331 kb on + strand, within BPHYT_RS19500 at 4389.332 kb on - strand, within BPHYT_RS19500 at 4389.332 kb on - strand, within BPHYT_RS19500
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days remove 4,385,686 - BPHYT_RS19490 0.11 +0.2 4,385,725 + BPHYT_RS19490 0.16 +1.1 4,386,394 + -0.8 4,386,401 + -0.3 4,386,448 + +0.3 4,386,481 + -1.2 4,386,502 - +0.4 4,386,576 + +1.9 4,386,576 + -0.3 4,386,576 + +0.5 4,386,581 + +0.8 4,386,581 + -0.4 4,386,582 - +0.4 4,386,614 + +0.1 4,386,614 + -0.7 4,386,615 - +0.8 4,386,806 + +0.0 4,386,807 - +0.6 4,386,807 - -0.2 4,386,807 - +0.0 4,386,997 + BPHYT_RS19495 0.18 -2.2 4,386,998 - BPHYT_RS19495 0.19 -0.8 4,387,118 - BPHYT_RS19495 0.26 +0.6 4,387,379 - BPHYT_RS19495 0.41 +0.8 4,387,452 - BPHYT_RS19495 0.45 -1.2 4,387,454 - BPHYT_RS19495 0.45 +0.1 4,387,454 - BPHYT_RS19495 0.45 -1.0 4,387,633 + BPHYT_RS19495 0.56 -0.5 4,387,634 - BPHYT_RS19495 0.56 +0.0 4,387,703 - BPHYT_RS19495 0.60 -0.2 4,388,047 + BPHYT_RS19495 0.80 +0.4 4,388,071 + BPHYT_RS19495 0.81 -1.0 4,388,072 - BPHYT_RS19495 0.81 +0.1 4,388,201 - BPHYT_RS19495 0.89 -0.7 4,388,233 + +2.0 4,388,234 - -2.1 4,388,338 + -0.6 4,388,339 - -0.2 4,388,386 + -0.8 4,388,461 + +0.1 4,388,533 + +1.4 4,388,615 - -1.1 4,388,639 - -0.8 4,389,206 - BPHYT_RS19500 0.44 -0.9 4,389,326 - BPHYT_RS19500 0.52 -1.0 4,389,331 + BPHYT_RS19500 0.52 -0.1 4,389,332 - BPHYT_RS19500 0.52 +1.4 4,389,332 - BPHYT_RS19500 0.52 +0.3
Or see this region's nucleotide sequence