Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS10920

Experiment: Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS10915 and BPHYT_RS10920 are separated by 331 nucleotidesBPHYT_RS10920 and BPHYT_RS10925 are separated by 321 nucleotides BPHYT_RS10915: BPHYT_RS10915 - radical SAM protein, at 2,484,196 to 2,485,617 _RS10915 BPHYT_RS10920: BPHYT_RS10920 - cold-shock protein, at 2,485,949 to 2,486,152 _RS10920 BPHYT_RS10925: BPHYT_RS10925 - aldehyde dehydrogenase, at 2,486,474 to 2,487,919 _RS10925 Position (kb) 2485 2486 2487Strain fitness (log2 ratio) -2 -1 0 1at 2485.028 kb on + strand, within BPHYT_RS10915at 2485.029 kb on - strand, within BPHYT_RS10915at 2485.413 kb on - strand, within BPHYT_RS10915at 2485.678 kb on + strandat 2485.679 kb on - strandat 2485.711 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days
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2,485,028 + BPHYT_RS10915 0.59 +0.5
2,485,029 - BPHYT_RS10915 0.59 -1.5
2,485,413 - BPHYT_RS10915 0.86 -0.8
2,485,678 + -1.3
2,485,679 - -1.3
2,485,711 + -1.9

Or see this region's nucleotide sequence