Experiment: Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS08525 and BPHYT_RS08530 are separated by 103 nucleotides BPHYT_RS08530 and BPHYT_RS08535 overlap by 26 nucleotides BPHYT_RS08535 and BPHYT_RS08540 are separated by 334 nucleotides
BPHYT_RS08525: BPHYT_RS08525 - SAM-dependent methyltransferase, at 1,950,418 to 1,951,251
_RS08525
BPHYT_RS08530: BPHYT_RS08530 - mannose-1-phosphate guanylyltransferase (GDP), at 1,951,355 to 1,952,572
_RS08530
BPHYT_RS08535: BPHYT_RS08535 - flavin reductase, at 1,952,547 to 1,953,137
_RS08535
BPHYT_RS08540: BPHYT_RS08540 - GntR family transcriptional regulator, at 1,953,472 to 1,954,197
_RS08540
Position (kb) 1951
1952
1953 Strain fitness (log2 ratio) -1
0
1
2 at 1950.367 kb on + strand at 1950.367 kb on + strand at 1950.368 kb on - strand at 1950.368 kb on - strand at 1950.399 kb on - strand at 1950.746 kb on - strand, within BPHYT_RS08525 at 1951.369 kb on - strand at 1952.403 kb on - strand, within BPHYT_RS08530 at 1952.561 kb on - strand at 1953.380 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days remove 1,950,367 + -0.5 1,950,367 + +0.7 1,950,368 - +1.9 1,950,368 - -0.7 1,950,399 - +1.7 1,950,746 - BPHYT_RS08525 0.39 +1.9 1,951,369 - -0.2 1,952,403 - BPHYT_RS08530 0.86 -0.7 1,952,561 - +0.3 1,953,380 + +1.1
Or see this region's nucleotide sequence