Experiment: Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS08510 and BPHYT_RS08515 overlap by 4 nucleotides BPHYT_RS08515 and BPHYT_RS08520 are separated by 324 nucleotides BPHYT_RS08520 and BPHYT_RS08525 are separated by 440 nucleotides
BPHYT_RS08510: BPHYT_RS08510 - acyl-CoA dehydrogenase, at 1,947,585 to 1,948,871
_RS08510
BPHYT_RS08515: BPHYT_RS08515 - acyl carrier protein, at 1,948,868 to 1,949,119
_RS08515
BPHYT_RS08520: BPHYT_RS08520 - GNAT family acetyltransferase, at 1,949,444 to 1,949,977
_RS08520
BPHYT_RS08525: BPHYT_RS08525 - SAM-dependent methyltransferase, at 1,950,418 to 1,951,251
_RS08525
Position (kb) 1949
1950 Strain fitness (log2 ratio) -1
0
1
2 at 1948.534 kb on + strand, within BPHYT_RS08510 at 1948.534 kb on + strand, within BPHYT_RS08510 at 1948.534 kb on + strand, within BPHYT_RS08510 at 1948.535 kb on - strand, within BPHYT_RS08510 at 1949.132 kb on + strand at 1949.225 kb on + strand at 1949.350 kb on + strand at 1949.351 kb on - strand at 1950.162 kb on - strand at 1950.367 kb on + strand at 1950.367 kb on + strand at 1950.368 kb on - strand at 1950.368 kb on - strand at 1950.399 kb on - strand at 1950.746 kb on - strand, within BPHYT_RS08525
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days remove 1,948,534 + BPHYT_RS08510 0.74 -0.3 1,948,534 + BPHYT_RS08510 0.74 -0.4 1,948,534 + BPHYT_RS08510 0.74 +2.5 1,948,535 - BPHYT_RS08510 0.74 -0.3 1,949,132 + -0.9 1,949,225 + +2.1 1,949,350 + +1.1 1,949,351 - -1.7 1,950,162 - +1.6 1,950,367 + -0.5 1,950,367 + +0.7 1,950,368 - +1.9 1,950,368 - -0.7 1,950,399 - +1.7 1,950,746 - BPHYT_RS08525 0.39 +1.9
Or see this region's nucleotide sequence