Experiment: Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS29180 and BPHYT_RS29185 overlap by 1 nucleotides BPHYT_RS29185 and BPHYT_RS29190 are separated by 9 nucleotides BPHYT_RS29190 and BPHYT_RS29195 are separated by 85 nucleotides
BPHYT_RS29180: BPHYT_RS29180 - sugar ABC transporter permease, at 2,102,380 to 2,103,300
_RS29180
BPHYT_RS29185: BPHYT_RS29185 - sugar ABC transporter permease, at 2,103,300 to 2,104,244
_RS29185
BPHYT_RS29190: BPHYT_RS29190 - sugar ABC transporter substrate-binding protein, at 2,104,254 to 2,105,492
_RS29190
BPHYT_RS29195: BPHYT_RS29195 - beta-glucosidase, at 2,105,578 to 2,106,990
_RS29195
Position (kb)
2104
2105
2106 Strain fitness (log2 ratio)
-1
0
1 at 2103.965 kb on - strand, within BPHYT_RS29185 at 2105.096 kb on - strand, within BPHYT_RS29190 at 2105.339 kb on + strand, within BPHYT_RS29190 at 2105.340 kb on - strand, within BPHYT_RS29190 at 2105.341 kb on + strand, within BPHYT_RS29190 at 2105.342 kb on - strand, within BPHYT_RS29190 at 2105.558 kb on + strand at 2105.559 kb on - strand at 2105.559 kb on - strand at 2105.579 kb on + strand at 2105.677 kb on - strand at 2105.876 kb on + strand, within BPHYT_RS29195 at 2105.876 kb on + strand, within BPHYT_RS29195 at 2105.877 kb on - strand, within BPHYT_RS29195 at 2105.980 kb on + strand, within BPHYT_RS29195 at 2106.039 kb on - strand, within BPHYT_RS29195
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days remove 2,103,965 - BPHYT_RS29185 0.70 -0.3 2,105,096 - BPHYT_RS29190 0.68 -0.9 2,105,339 + BPHYT_RS29190 0.88 -1.4 2,105,340 - BPHYT_RS29190 0.88 -0.3 2,105,341 + BPHYT_RS29190 0.88 -0.3 2,105,342 - BPHYT_RS29190 0.88 -0.3 2,105,558 + +0.4 2,105,559 - -0.4 2,105,559 - -0.7 2,105,579 + -1.5 2,105,677 - +1.3 2,105,876 + BPHYT_RS29195 0.21 -0.2 2,105,876 + BPHYT_RS29195 0.21 -1.6 2,105,877 - BPHYT_RS29195 0.21 +0.9 2,105,980 + BPHYT_RS29195 0.28 +0.6 2,106,039 - BPHYT_RS29195 0.33 -0.3
Or see this region's nucleotide sequence