Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS29140

Experiment: Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS29135 and BPHYT_RS29140 are separated by 323 nucleotidesBPHYT_RS29140 and BPHYT_RS29145 are separated by 145 nucleotides BPHYT_RS29135: BPHYT_RS29135 - acriflavin resistance protein, at 2,090,455 to 2,093,703 _RS29135 BPHYT_RS29140: BPHYT_RS29140 - glyoxalase, at 2,094,027 to 2,094,461 _RS29140 BPHYT_RS29145: BPHYT_RS29145 - LysR family transcriptional regulator, at 2,094,607 to 2,095,491 _RS29145 Position (kb) 2094 2095Strain fitness (log2 ratio) -1 0 1at 2093.553 kb on - strandat 2093.756 kb on + strandat 2094.009 kb on - strandat 2094.826 kb on + strand, within BPHYT_RS29145

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days
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2,093,553 - +0.8
2,093,756 + -1.3
2,094,009 - +1.3
2,094,826 + BPHYT_RS29145 0.25 +0.6

Or see this region's nucleotide sequence