Experiment: Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS27615 and BPHYT_RS27620 are separated by 432 nucleotides BPHYT_RS27620 and BPHYT_RS27625 are separated by 72 nucleotides BPHYT_RS27625 and BPHYT_RS27635 are separated by 604 nucleotides
BPHYT_RS27615: BPHYT_RS27615 - F0F1 ATP synthase subunit beta, at 1,764,375 to 1,765,853
_RS27615
BPHYT_RS27620: BPHYT_RS27620 - UDP-glucose 4-epimerase, at 1,766,286 to 1,766,504
_RS27620
BPHYT_RS27625: BPHYT_RS27625 - transport-associated protein, at 1,766,577 to 1,767,227
_RS27625
BPHYT_RS27635: BPHYT_RS27635 - alcohol dehydrogenase, at 1,767,832 to 1,768,872
_RS27635
Position (kb) 1766
1767
1768 Strain fitness (log2 ratio) -1
0
1
2
3
4
5 at 1766.060 kb on + strand at 1766.111 kb on + strand at 1766.411 kb on + strand, within BPHYT_RS27620 at 1766.563 kb on + strand at 1766.712 kb on + strand, within BPHYT_RS27625 at 1766.714 kb on + strand, within BPHYT_RS27625 at 1767.098 kb on - strand, within BPHYT_RS27625 at 1767.249 kb on + strand at 1767.381 kb on - strand at 1767.592 kb on + strand at 1768.015 kb on - strand, within BPHYT_RS27635 at 1768.073 kb on - strand, within BPHYT_RS27635
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days remove 1,766,060 + +0.8 1,766,111 + -0.1 1,766,411 + BPHYT_RS27620 0.57 +5.6 1,766,563 + +2.0 1,766,712 + BPHYT_RS27625 0.21 -0.2 1,766,714 + BPHYT_RS27625 0.21 -1.1 1,767,098 - BPHYT_RS27625 0.80 -0.8 1,767,249 + -0.0 1,767,381 - +1.9 1,767,592 + -0.1 1,768,015 - BPHYT_RS27635 0.18 -1.3 1,768,073 - BPHYT_RS27635 0.23 -0.9
Or see this region's nucleotide sequence