Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS26505

Experiment: Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS26495 and BPHYT_RS26500 are separated by 39 nucleotidesBPHYT_RS26500 and BPHYT_RS26505 overlap by 4 nucleotidesBPHYT_RS26505 and BPHYT_RS26510 are separated by 160 nucleotides BPHYT_RS26495: BPHYT_RS26495 - glutathione S-transferase, at 1,515,044 to 1,515,682 _RS26495 BPHYT_RS26500: BPHYT_RS26500 - ATPase, at 1,515,722 to 1,516,171 _RS26500 BPHYT_RS26505: BPHYT_RS26505 - ArsR family transcriptional regulator, at 1,516,168 to 1,516,503 _RS26505 BPHYT_RS26510: BPHYT_RS26510 - transcriptional regulator, at 1,516,664 to 1,517,569 _RS26510 Position (kb) 1516 1517Strain fitness (log2 ratio) -2 -1 0 1at 1515.670 kb on - strandat 1516.857 kb on - strand, within BPHYT_RS26510at 1516.865 kb on + strand, within BPHYT_RS26510at 1517.175 kb on - strand, within BPHYT_RS26510

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days
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1,515,670 - -0.7
1,516,857 - BPHYT_RS26510 0.21 -1.9
1,516,865 + BPHYT_RS26510 0.22 -1.2
1,517,175 - BPHYT_RS26510 0.56 +0.3

Or see this region's nucleotide sequence