Experiment: Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS25120 and BPHYT_RS25125 are separated by 57 nucleotides BPHYT_RS25125 and BPHYT_RS25130 are separated by 142 nucleotides BPHYT_RS25130 and BPHYT_RS25135 are separated by 3 nucleotides BPHYT_RS25135 and BPHYT_RS25140 overlap by 4 nucleotides
BPHYT_RS25120: BPHYT_RS25120 - sarcosine oxidase subunit gamma, at 1,209,673 to 1,210,329
_RS25120
BPHYT_RS25125: BPHYT_RS25125 - hypothetical protein, at 1,210,387 to 1,210,650
_RS25125
BPHYT_RS25130: BPHYT_RS25130 - MFS transporter, at 1,210,793 to 1,212,211
_RS25130
BPHYT_RS25135: BPHYT_RS25135 - hypothetical protein, at 1,212,215 to 1,212,658
_RS25135
BPHYT_RS25140: BPHYT_RS25140 - hypothetical protein, at 1,212,655 to 1,213,164
_RS25140
Position (kb) 1210
1211
1212
1213 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1210.282 kb on + strand at 1210.711 kb on + strand at 1210.712 kb on - strand at 1211.284 kb on + strand, within BPHYT_RS25130 at 1211.364 kb on + strand, within BPHYT_RS25130 at 1211.822 kb on + strand, within BPHYT_RS25130 at 1211.826 kb on + strand, within BPHYT_RS25130 at 1212.020 kb on + strand, within BPHYT_RS25130 at 1212.021 kb on - strand, within BPHYT_RS25130 at 1212.216 kb on + strand at 1212.519 kb on + strand, within BPHYT_RS25135 at 1212.629 kb on - strand at 1213.031 kb on - strand, within BPHYT_RS25140 at 1213.082 kb on + strand, within BPHYT_RS25140 at 1213.193 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days remove 1,210,282 + +0.6 1,210,711 + -0.3 1,210,712 - +1.0 1,211,284 + BPHYT_RS25130 0.35 +0.5 1,211,364 + BPHYT_RS25130 0.40 +0.3 1,211,822 + BPHYT_RS25130 0.73 +0.0 1,211,826 + BPHYT_RS25130 0.73 -0.5 1,212,020 + BPHYT_RS25130 0.86 +0.6 1,212,021 - BPHYT_RS25130 0.87 -0.6 1,212,216 + -0.6 1,212,519 + BPHYT_RS25135 0.68 -1.9 1,212,629 - -3.0 1,213,031 - BPHYT_RS25140 0.74 -0.2 1,213,082 + BPHYT_RS25140 0.84 +0.2 1,213,193 + -0.8
Or see this region's nucleotide sequence