Experiment: Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS22415 and BPHYT_RS22420 are separated by 328 nucleotides BPHYT_RS22420 and BPHYT_RS22425 are separated by 32 nucleotides BPHYT_RS22425 and BPHYT_RS22430 are separated by 221 nucleotides
BPHYT_RS22415: BPHYT_RS22415 - nitrite reductase, at 582,910 to 584,700
_RS22415
BPHYT_RS22420: BPHYT_RS22420 - membrane protein, at 585,029 to 585,217
_RS22420
BPHYT_RS22425: BPHYT_RS22425 - GntR family transcriptional regulator, at 585,250 to 586,665
_RS22425
BPHYT_RS22430: BPHYT_RS22430 - succinate-semialdehyde dehydrogenase, at 586,887 to 588,347
_RS22430
Position (kb) 585
586
587 Strain fitness (log2 ratio) -2
-1
0
1
2 at 584.468 kb on + strand, within BPHYT_RS22415 at 584.469 kb on - strand, within BPHYT_RS22415 at 584.690 kb on + strand at 584.690 kb on + strand at 585.148 kb on - strand, within BPHYT_RS22420 at 585.339 kb on + strand at 585.465 kb on - strand, within BPHYT_RS22425 at 585.465 kb on - strand, within BPHYT_RS22425 at 585.507 kb on - strand, within BPHYT_RS22425 at 585.507 kb on - strand, within BPHYT_RS22425 at 585.582 kb on - strand, within BPHYT_RS22425 at 585.942 kb on + strand, within BPHYT_RS22425 at 586.188 kb on - strand, within BPHYT_RS22425 at 586.198 kb on + strand, within BPHYT_RS22425 at 586.759 kb on - strand at 586.811 kb on + strand at 586.910 kb on - strand at 586.925 kb on - strand at 586.925 kb on - strand at 587.083 kb on + strand, within BPHYT_RS22430 at 587.084 kb on - strand, within BPHYT_RS22430 at 587.084 kb on - strand, within BPHYT_RS22430 at 587.084 kb on - strand, within BPHYT_RS22430 at 587.452 kb on + strand, within BPHYT_RS22430 at 587.453 kb on - strand, within BPHYT_RS22430 at 587.453 kb on - strand, within BPHYT_RS22430
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days remove 584,468 + BPHYT_RS22415 0.87 +0.9 584,469 - BPHYT_RS22415 0.87 -0.2 584,690 + -1.1 584,690 + -0.7 585,148 - BPHYT_RS22420 0.63 -2.3 585,339 + +0.1 585,465 - BPHYT_RS22425 0.15 -0.4 585,465 - BPHYT_RS22425 0.15 -1.3 585,507 - BPHYT_RS22425 0.18 +1.0 585,507 - BPHYT_RS22425 0.18 +1.4 585,582 - BPHYT_RS22425 0.23 +0.4 585,942 + BPHYT_RS22425 0.49 -0.2 586,188 - BPHYT_RS22425 0.66 -1.1 586,198 + BPHYT_RS22425 0.67 +0.2 586,759 - +2.7 586,811 + -0.1 586,910 - +0.1 586,925 - -1.3 586,925 - -0.4 587,083 + BPHYT_RS22430 0.13 -0.2 587,084 - BPHYT_RS22430 0.13 +0.4 587,084 - BPHYT_RS22430 0.13 +0.3 587,084 - BPHYT_RS22430 0.13 +1.0 587,452 + BPHYT_RS22430 0.39 +0.7 587,453 - BPHYT_RS22430 0.39 +0.6 587,453 - BPHYT_RS22430 0.39 +0.9
Or see this region's nucleotide sequence