Experiment: Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS20090 and BPHYT_RS20095 are separated by 249 nucleotides BPHYT_RS20095 and BPHYT_RS20100 overlap by 11 nucleotides BPHYT_RS20100 and BPHYT_RS20105 are separated by 155 nucleotides
BPHYT_RS20090: BPHYT_RS20090 - nitrate ABC transporter substrate-binding protein, at 49,893 to 50,912
_RS20090
BPHYT_RS20095: BPHYT_RS20095 - transcriptional regulator, at 51,162 to 51,839
_RS20095
BPHYT_RS20100: BPHYT_RS20100 - sensor histidine kinase, at 51,829 to 53,223
_RS20100
BPHYT_RS20105: BPHYT_RS20105 - nitrate ABC transporter substrate-binding protein, at 53,379 to 54,419
_RS20105
Position (kb) 51
52
53
54 Strain fitness (log2 ratio) -1
0
1 at 50.985 kb on + strand at 51.545 kb on - strand, within BPHYT_RS20095 at 51.891 kb on - strand at 52.046 kb on + strand, within BPHYT_RS20100 at 52.078 kb on + strand, within BPHYT_RS20100 at 52.078 kb on + strand, within BPHYT_RS20100 at 52.079 kb on - strand, within BPHYT_RS20100 at 52.079 kb on - strand, within BPHYT_RS20100 at 52.683 kb on + strand, within BPHYT_RS20100 at 52.930 kb on - strand, within BPHYT_RS20100 at 53.211 kb on + strand at 53.895 kb on + strand, within BPHYT_RS20105 at 53.896 kb on - strand, within BPHYT_RS20105 at 54.035 kb on + strand, within BPHYT_RS20105 at 54.036 kb on - strand, within BPHYT_RS20105
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days remove 50,985 + -0.3 51,545 - BPHYT_RS20095 0.56 +0.9 51,891 - +1.3 52,046 + BPHYT_RS20100 0.16 +0.0 52,078 + BPHYT_RS20100 0.18 -0.8 52,078 + BPHYT_RS20100 0.18 -1.0 52,079 - BPHYT_RS20100 0.18 -0.9 52,079 - BPHYT_RS20100 0.18 -0.5 52,683 + BPHYT_RS20100 0.61 +0.9 52,930 - BPHYT_RS20100 0.79 -0.3 53,211 + -0.5 53,895 + BPHYT_RS20105 0.50 +0.3 53,896 - BPHYT_RS20105 0.50 +0.0 54,035 + BPHYT_RS20105 0.63 -0.2 54,036 - BPHYT_RS20105 0.63 +0.3
Or see this region's nucleotide sequence