Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS15175

Experiment: Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS15170 and BPHYT_RS15175 overlap by 4 nucleotidesBPHYT_RS15175 and BPHYT_RS15180 overlap by 4 nucleotidesBPHYT_RS15180 and BPHYT_RS15185 overlap by 1 nucleotidesBPHYT_RS15185 and BPHYT_RS15190 are separated by 3 nucleotides BPHYT_RS15170: BPHYT_RS15170 - family 2 glycosyl transferase, at 3,451,786 to 3,453,513 _RS15170 BPHYT_RS15175: BPHYT_RS15175 - AMP-dependent synthetase, at 3,453,510 to 3,455,216 _RS15175 BPHYT_RS15180: BPHYT_RS15180 - membrane protein, at 3,455,213 to 3,455,875 _RS15180 BPHYT_RS15185: BPHYT_RS15185 - acyl carrier protein, at 3,455,875 to 3,456,126 _RS15185 BPHYT_RS15190: BPHYT_RS15190 - acyl carrier protein, at 3,456,130 to 3,456,429 _RS15190 Position (kb) 3453 3454 3455 3456Strain fitness (log2 ratio) -1 0 1 2 3 4 5at 3452.564 kb on + strand, within BPHYT_RS15170at 3452.832 kb on + strand, within BPHYT_RS15170at 3452.898 kb on - strand, within BPHYT_RS15170at 3452.898 kb on - strand, within BPHYT_RS15170at 3452.943 kb on - strand, within BPHYT_RS15170at 3453.805 kb on + strand, within BPHYT_RS15175at 3454.117 kb on + strand, within BPHYT_RS15175at 3454.117 kb on + strand, within BPHYT_RS15175at 3454.651 kb on - strand, within BPHYT_RS15175at 3454.672 kb on + strand, within BPHYT_RS15175at 3454.746 kb on - strand, within BPHYT_RS15175at 3454.746 kb on - strand, within BPHYT_RS15175at 3454.746 kb on - strand, within BPHYT_RS15175at 3454.865 kb on + strand, within BPHYT_RS15175at 3454.865 kb on + strand, within BPHYT_RS15175at 3454.866 kb on - strand, within BPHYT_RS15175at 3454.923 kb on + strand, within BPHYT_RS15175at 3454.934 kb on - strand, within BPHYT_RS15175at 3455.154 kb on + strandat 3455.164 kb on + strandat 3455.164 kb on + strandat 3455.164 kb on + strandat 3455.165 kb on - strandat 3455.165 kb on - strandat 3455.301 kb on + strand, within BPHYT_RS15180at 3455.302 kb on - strand, within BPHYT_RS15180at 3455.302 kb on - strand, within BPHYT_RS15180at 3455.320 kb on - strand, within BPHYT_RS15180at 3455.358 kb on + strand, within BPHYT_RS15180at 3455.419 kb on + strand, within BPHYT_RS15180at 3455.419 kb on + strand, within BPHYT_RS15180at 3455.420 kb on - strand, within BPHYT_RS15180at 3456.132 kb on - strandat 3456.132 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days
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3,452,564 + BPHYT_RS15170 0.45 +1.2
3,452,832 + BPHYT_RS15170 0.61 -0.9
3,452,898 - BPHYT_RS15170 0.64 +0.2
3,452,898 - BPHYT_RS15170 0.64 -0.3
3,452,943 - BPHYT_RS15170 0.67 -0.5
3,453,805 + BPHYT_RS15175 0.17 -0.1
3,454,117 + BPHYT_RS15175 0.36 +0.9
3,454,117 + BPHYT_RS15175 0.36 +0.1
3,454,651 - BPHYT_RS15175 0.67 +0.9
3,454,672 + BPHYT_RS15175 0.68 -0.6
3,454,746 - BPHYT_RS15175 0.72 -1.1
3,454,746 - BPHYT_RS15175 0.72 -0.3
3,454,746 - BPHYT_RS15175 0.72 -0.3
3,454,865 + BPHYT_RS15175 0.79 +0.1
3,454,865 + BPHYT_RS15175 0.79 -0.7
3,454,866 - BPHYT_RS15175 0.79 -0.0
3,454,923 + BPHYT_RS15175 0.83 +3.4
3,454,934 - BPHYT_RS15175 0.83 -0.0
3,455,154 + +1.0
3,455,164 + -0.1
3,455,164 + -0.2
3,455,164 + -0.1
3,455,165 - -0.3
3,455,165 - +0.3
3,455,301 + BPHYT_RS15180 0.13 +5.4
3,455,302 - BPHYT_RS15180 0.13 +0.4
3,455,302 - BPHYT_RS15180 0.13 +1.0
3,455,320 - BPHYT_RS15180 0.16 +0.5
3,455,358 + BPHYT_RS15180 0.22 -0.5
3,455,419 + BPHYT_RS15180 0.31 +0.7
3,455,419 + BPHYT_RS15180 0.31 +1.7
3,455,420 - BPHYT_RS15180 0.31 +0.7
3,456,132 - -0.9
3,456,132 - -0.7

Or see this region's nucleotide sequence