Experiment: Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS15170 and BPHYT_RS15175 overlap by 4 nucleotides BPHYT_RS15175 and BPHYT_RS15180 overlap by 4 nucleotides BPHYT_RS15180 and BPHYT_RS15185 overlap by 1 nucleotides BPHYT_RS15185 and BPHYT_RS15190 are separated by 3 nucleotides
BPHYT_RS15170: BPHYT_RS15170 - family 2 glycosyl transferase, at 3,451,786 to 3,453,513
_RS15170
BPHYT_RS15175: BPHYT_RS15175 - AMP-dependent synthetase, at 3,453,510 to 3,455,216
_RS15175
BPHYT_RS15180: BPHYT_RS15180 - membrane protein, at 3,455,213 to 3,455,875
_RS15180
BPHYT_RS15185: BPHYT_RS15185 - acyl carrier protein, at 3,455,875 to 3,456,126
_RS15185
BPHYT_RS15190: BPHYT_RS15190 - acyl carrier protein, at 3,456,130 to 3,456,429
_RS15190
Position (kb)
3453
3454
3455
3456 Strain fitness (log2 ratio)
-1
0
1
2
3
4
5 at 3452.564 kb on + strand, within BPHYT_RS15170 at 3452.832 kb on + strand, within BPHYT_RS15170 at 3452.898 kb on - strand, within BPHYT_RS15170 at 3452.898 kb on - strand, within BPHYT_RS15170 at 3452.943 kb on - strand, within BPHYT_RS15170 at 3453.805 kb on + strand, within BPHYT_RS15175 at 3454.117 kb on + strand, within BPHYT_RS15175 at 3454.117 kb on + strand, within BPHYT_RS15175 at 3454.651 kb on - strand, within BPHYT_RS15175 at 3454.672 kb on + strand, within BPHYT_RS15175 at 3454.746 kb on - strand, within BPHYT_RS15175 at 3454.746 kb on - strand, within BPHYT_RS15175 at 3454.746 kb on - strand, within BPHYT_RS15175 at 3454.865 kb on + strand, within BPHYT_RS15175 at 3454.865 kb on + strand, within BPHYT_RS15175 at 3454.866 kb on - strand, within BPHYT_RS15175 at 3454.923 kb on + strand, within BPHYT_RS15175 at 3454.934 kb on - strand, within BPHYT_RS15175 at 3455.154 kb on + strand at 3455.164 kb on + strand at 3455.164 kb on + strand at 3455.164 kb on + strand at 3455.165 kb on - strand at 3455.165 kb on - strand at 3455.301 kb on + strand, within BPHYT_RS15180 at 3455.302 kb on - strand, within BPHYT_RS15180 at 3455.302 kb on - strand, within BPHYT_RS15180 at 3455.320 kb on - strand, within BPHYT_RS15180 at 3455.358 kb on + strand, within BPHYT_RS15180 at 3455.419 kb on + strand, within BPHYT_RS15180 at 3455.419 kb on + strand, within BPHYT_RS15180 at 3455.420 kb on - strand, within BPHYT_RS15180 at 3456.132 kb on - strand at 3456.132 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days remove 3,452,564 + BPHYT_RS15170 0.45 +1.2 3,452,832 + BPHYT_RS15170 0.61 -0.9 3,452,898 - BPHYT_RS15170 0.64 +0.2 3,452,898 - BPHYT_RS15170 0.64 -0.3 3,452,943 - BPHYT_RS15170 0.67 -0.5 3,453,805 + BPHYT_RS15175 0.17 -0.1 3,454,117 + BPHYT_RS15175 0.36 +0.9 3,454,117 + BPHYT_RS15175 0.36 +0.1 3,454,651 - BPHYT_RS15175 0.67 +0.9 3,454,672 + BPHYT_RS15175 0.68 -0.6 3,454,746 - BPHYT_RS15175 0.72 -1.1 3,454,746 - BPHYT_RS15175 0.72 -0.3 3,454,746 - BPHYT_RS15175 0.72 -0.3 3,454,865 + BPHYT_RS15175 0.79 +0.1 3,454,865 + BPHYT_RS15175 0.79 -0.7 3,454,866 - BPHYT_RS15175 0.79 -0.0 3,454,923 + BPHYT_RS15175 0.83 +3.4 3,454,934 - BPHYT_RS15175 0.83 -0.0 3,455,154 + +1.0 3,455,164 + -0.1 3,455,164 + -0.2 3,455,164 + -0.1 3,455,165 - -0.3 3,455,165 - +0.3 3,455,301 + BPHYT_RS15180 0.13 +5.4 3,455,302 - BPHYT_RS15180 0.13 +0.4 3,455,302 - BPHYT_RS15180 0.13 +1.0 3,455,320 - BPHYT_RS15180 0.16 +0.5 3,455,358 + BPHYT_RS15180 0.22 -0.5 3,455,419 + BPHYT_RS15180 0.31 +0.7 3,455,419 + BPHYT_RS15180 0.31 +1.7 3,455,420 - BPHYT_RS15180 0.31 +0.7 3,456,132 - -0.9 3,456,132 - -0.7
Or see this region's nucleotide sequence