Experiment: Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS10870 and BPHYT_RS10875 overlap by 4 nucleotides BPHYT_RS10875 and BPHYT_RS10880 are separated by 169 nucleotides BPHYT_RS10880 and BPHYT_RS10885 overlap by 11 nucleotides
BPHYT_RS10870: BPHYT_RS10870 - RND transporter, at 2,472,756 to 2,473,877
_RS10870
BPHYT_RS10875: BPHYT_RS10875 - transporter, at 2,473,874 to 2,476,924
_RS10875
BPHYT_RS10880: BPHYT_RS10880 - hopanoid biosynthesis associated protein HpnK, at 2,477,094 to 2,477,918
_RS10880
BPHYT_RS10885: BPHYT_RS10885 - glycosyl transferase, at 2,477,908 to 2,479,215
_RS10885
Position (kb) 2473
2474
2475
2476
2477 Strain fitness (log2 ratio) -1
0
1
2 at 2473.825 kb on - strand at 2473.825 kb on - strand at 2474.457 kb on - strand, within BPHYT_RS10875 at 2474.723 kb on + strand, within BPHYT_RS10875 at 2475.876 kb on - strand, within BPHYT_RS10875 at 2476.386 kb on - strand, within BPHYT_RS10875 at 2477.095 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days remove 2,473,825 - -0.2 2,473,825 - -0.6 2,474,457 - BPHYT_RS10875 0.19 +0.5 2,474,723 + BPHYT_RS10875 0.28 +2.7 2,475,876 - BPHYT_RS10875 0.66 +0.2 2,476,386 - BPHYT_RS10875 0.82 +0.0 2,477,095 + -0.3
Or see this region's nucleotide sequence