Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS10445

Experiment: Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS10440 and BPHYT_RS10445 are separated by 270 nucleotidesBPHYT_RS10445 and BPHYT_RS10450 are separated by 388 nucleotides BPHYT_RS10440: BPHYT_RS10440 - GntR family transcriptional regulator, at 2,373,085 to 2,374,419 _RS10440 BPHYT_RS10445: BPHYT_RS10445 - hypothetical protein, at 2,374,690 to 2,375,439 _RS10445 BPHYT_RS10450: BPHYT_RS10450 - prolyl-tRNA synthetase, at 2,375,828 to 2,376,970 _RS10450 Position (kb) 2374 2375 2376Strain fitness (log2 ratio) -1 0 1at 2373.937 kb on + strand, within BPHYT_RS10440at 2374.204 kb on + strand, within BPHYT_RS10440at 2374.415 kb on - strandat 2374.809 kb on - strand, within BPHYT_RS10445

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days
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2,373,937 + BPHYT_RS10440 0.64 +1.3
2,374,204 + BPHYT_RS10440 0.84 -0.7
2,374,415 - +0.1
2,374,809 - BPHYT_RS10445 0.16 -1.3

Or see this region's nucleotide sequence