Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS07850

Experiment: Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS07845 and BPHYT_RS07850 are separated by 174 nucleotidesBPHYT_RS07850 and BPHYT_RS07855 are separated by 112 nucleotides BPHYT_RS07845: BPHYT_RS07845 - LysR family transcriptional regulator, at 1,787,482 to 1,788,405 _RS07845 BPHYT_RS07850: BPHYT_RS07850 - catechol 1,2-dioxygenase, at 1,788,580 to 1,789,515 _RS07850 BPHYT_RS07855: BPHYT_RS07855 - benzoate 1,2-dioxygenase subunit alpha, at 1,789,628 to 1,790,986 _RS07855 Position (kb) 1788 1789 1790Strain fitness (log2 ratio) -1 0 1 2 3at 1787.745 kb on - strand, within BPHYT_RS07845at 1788.265 kb on + strand, within BPHYT_RS07845at 1788.266 kb on - strand, within BPHYT_RS07845at 1788.471 kb on - strandat 1788.760 kb on + strand, within BPHYT_RS07850at 1788.761 kb on - strand, within BPHYT_RS07850at 1789.070 kb on - strand, within BPHYT_RS07850at 1789.148 kb on - strand, within BPHYT_RS07850at 1789.178 kb on - strand, within BPHYT_RS07850at 1789.473 kb on + strandat 1789.832 kb on + strand, within BPHYT_RS07855at 1790.159 kb on + strand, within BPHYT_RS07855at 1790.250 kb on - strand, within BPHYT_RS07855at 1790.405 kb on + strand, within BPHYT_RS07855

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days
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1,787,745 - BPHYT_RS07845 0.28 +3.6
1,788,265 + BPHYT_RS07845 0.85 -0.1
1,788,266 - BPHYT_RS07845 0.85 -0.8
1,788,471 - +0.9
1,788,760 + BPHYT_RS07850 0.19 +0.3
1,788,761 - BPHYT_RS07850 0.19 +0.0
1,789,070 - BPHYT_RS07850 0.52 -0.2
1,789,148 - BPHYT_RS07850 0.61 -0.1
1,789,178 - BPHYT_RS07850 0.64 +0.2
1,789,473 + -0.1
1,789,832 + BPHYT_RS07855 0.15 +1.7
1,790,159 + BPHYT_RS07855 0.39 +0.1
1,790,250 - BPHYT_RS07855 0.46 -1.2
1,790,405 + BPHYT_RS07855 0.57 -0.3

Or see this region's nucleotide sequence