Experiment: Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS06500 and BPHYT_RS06505 are separated by 2 nucleotides BPHYT_RS06505 and BPHYT_RS06510 are separated by 205 nucleotides BPHYT_RS06510 and BPHYT_RS06515 are separated by 170 nucleotides
BPHYT_RS06500: BPHYT_RS06500 - LOG family protein, at 1,478,186 to 1,478,770
_RS06500
BPHYT_RS06505: BPHYT_RS06505 - TetR family transcriptional regulator, at 1,478,773 to 1,479,498
_RS06505
BPHYT_RS06510: BPHYT_RS06510 - DeoR faimly transcriptional regulator, at 1,479,704 to 1,480,192
_RS06510
BPHYT_RS06515: BPHYT_RS06515 - GDP-mannose-dependent alpha-mannosyltransferase, at 1,480,363 to 1,481,394
_RS06515
Position (kb) 1479
1480
1481 Strain fitness (log2 ratio) -1
0
1
2
3 at 1478.718 kb on + strand at 1478.719 kb on - strand at 1478.751 kb on + strand at 1478.752 kb on - strand at 1478.831 kb on + strand at 1478.999 kb on + strand, within BPHYT_RS06505 at 1479.011 kb on + strand, within BPHYT_RS06505 at 1479.012 kb on - strand, within BPHYT_RS06505 at 1479.044 kb on - strand, within BPHYT_RS06505 at 1479.230 kb on + strand, within BPHYT_RS06505 at 1479.230 kb on + strand, within BPHYT_RS06505 at 1479.230 kb on + strand, within BPHYT_RS06505 at 1479.231 kb on - strand, within BPHYT_RS06505 at 1479.231 kb on - strand, within BPHYT_RS06505 at 1479.231 kb on - strand, within BPHYT_RS06505 at 1479.231 kb on - strand, within BPHYT_RS06505 at 1479.231 kb on - strand, within BPHYT_RS06505 at 1479.231 kb on - strand, within BPHYT_RS06505 at 1479.231 kb on - strand, within BPHYT_RS06505 at 1479.231 kb on - strand, within BPHYT_RS06505 at 1479.231 kb on - strand, within BPHYT_RS06505 at 1479.239 kb on + strand, within BPHYT_RS06505 at 1479.362 kb on + strand, within BPHYT_RS06505 at 1479.363 kb on - strand, within BPHYT_RS06505 at 1479.363 kb on - strand, within BPHYT_RS06505 at 1479.608 kb on - strand at 1479.608 kb on - strand at 1479.611 kb on - strand at 1479.683 kb on - strand at 1480.090 kb on - strand, within BPHYT_RS06510 at 1480.090 kb on - strand, within BPHYT_RS06510 at 1480.676 kb on + strand, within BPHYT_RS06515 at 1480.716 kb on - strand, within BPHYT_RS06515 at 1481.028 kb on - strand, within BPHYT_RS06515 at 1481.028 kb on - strand, within BPHYT_RS06515 at 1481.028 kb on - strand, within BPHYT_RS06515 at 1481.067 kb on - strand, within BPHYT_RS06515 at 1481.067 kb on - strand, within BPHYT_RS06515
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days remove 1,478,718 + +3.0 1,478,719 - -0.7 1,478,751 + -0.6 1,478,752 - -1.1 1,478,831 + +0.1 1,478,999 + BPHYT_RS06505 0.31 -1.6 1,479,011 + BPHYT_RS06505 0.33 -1.1 1,479,012 - BPHYT_RS06505 0.33 +0.8 1,479,044 - BPHYT_RS06505 0.37 +0.2 1,479,230 + BPHYT_RS06505 0.63 -0.6 1,479,230 + BPHYT_RS06505 0.63 +0.0 1,479,230 + BPHYT_RS06505 0.63 +2.1 1,479,231 - BPHYT_RS06505 0.63 -1.0 1,479,231 - BPHYT_RS06505 0.63 +0.4 1,479,231 - BPHYT_RS06505 0.63 -0.4 1,479,231 - BPHYT_RS06505 0.63 -0.6 1,479,231 - BPHYT_RS06505 0.63 -0.3 1,479,231 - BPHYT_RS06505 0.63 +0.2 1,479,231 - BPHYT_RS06505 0.63 -1.6 1,479,231 - BPHYT_RS06505 0.63 +0.6 1,479,231 - BPHYT_RS06505 0.63 -0.7 1,479,239 + BPHYT_RS06505 0.64 +0.6 1,479,362 + BPHYT_RS06505 0.81 +0.1 1,479,363 - BPHYT_RS06505 0.81 -0.1 1,479,363 - BPHYT_RS06505 0.81 -0.1 1,479,608 - +0.3 1,479,608 - -0.6 1,479,611 - +1.0 1,479,683 - +0.8 1,480,090 - BPHYT_RS06510 0.79 -0.5 1,480,090 - BPHYT_RS06510 0.79 +0.4 1,480,676 + BPHYT_RS06515 0.30 -1.3 1,480,716 - BPHYT_RS06515 0.34 +1.8 1,481,028 - BPHYT_RS06515 0.64 +1.4 1,481,028 - BPHYT_RS06515 0.64 +1.1 1,481,028 - BPHYT_RS06515 0.64 +1.4 1,481,067 - BPHYT_RS06515 0.68 +1.7 1,481,067 - BPHYT_RS06515 0.68 -1.6
Or see this region's nucleotide sequence