Experiment: Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS04140 and BPHYT_RS04145 are separated by 117 nucleotides BPHYT_RS04145 and BPHYT_RS04150 overlap by 4 nucleotides
BPHYT_RS04140: BPHYT_RS04140 - polysaccharide biosynthesis protein, at 948,609 to 949,868
_RS04140
BPHYT_RS04145: BPHYT_RS04145 - family 2 glycosyl transferase, at 949,986 to 950,957
_RS04145
BPHYT_RS04150: BPHYT_RS04150 - UDP-galactopyranose mutase, at 950,954 to 952,045
_RS04150
Position (kb) 949
950
951 Strain fitness (log2 ratio) -1
0
1
2
3
4
5 at 949.174 kb on + strand, within BPHYT_RS04140 at 949.287 kb on + strand, within BPHYT_RS04140 at 949.682 kb on + strand, within BPHYT_RS04140 at 949.946 kb on + strand at 949.947 kb on - strand at 950.026 kb on - strand at 950.182 kb on - strand, within BPHYT_RS04145 at 950.228 kb on + strand, within BPHYT_RS04145 at 950.228 kb on + strand, within BPHYT_RS04145 at 950.310 kb on - strand, within BPHYT_RS04145 at 950.310 kb on - strand, within BPHYT_RS04145 at 950.372 kb on - strand, within BPHYT_RS04145 at 950.465 kb on + strand, within BPHYT_RS04145 at 950.466 kb on - strand, within BPHYT_RS04145 at 950.687 kb on - strand, within BPHYT_RS04145 at 950.832 kb on - strand, within BPHYT_RS04145 at 950.838 kb on - strand, within BPHYT_RS04145 at 951.013 kb on - strand at 951.121 kb on - strand, within BPHYT_RS04150 at 951.217 kb on - strand, within BPHYT_RS04150 at 951.357 kb on + strand, within BPHYT_RS04150 at 951.694 kb on - strand, within BPHYT_RS04150 at 951.838 kb on - strand, within BPHYT_RS04150
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days remove 949,174 + BPHYT_RS04140 0.45 +1.2 949,287 + BPHYT_RS04140 0.54 -0.6 949,682 + BPHYT_RS04140 0.85 +0.0 949,946 + +1.0 949,947 - +0.0 950,026 - -0.6 950,182 - BPHYT_RS04145 0.20 +2.4 950,228 + BPHYT_RS04145 0.25 -1.4 950,228 + BPHYT_RS04145 0.25 -0.4 950,310 - BPHYT_RS04145 0.33 -0.5 950,310 - BPHYT_RS04145 0.33 +0.1 950,372 - BPHYT_RS04145 0.40 +0.8 950,465 + BPHYT_RS04145 0.49 -0.1 950,466 - BPHYT_RS04145 0.49 -0.6 950,687 - BPHYT_RS04145 0.72 +0.3 950,832 - BPHYT_RS04145 0.87 +0.3 950,838 - BPHYT_RS04145 0.88 +1.2 951,013 - +4.9 951,121 - BPHYT_RS04150 0.15 +1.4 951,217 - BPHYT_RS04150 0.24 -0.7 951,357 + BPHYT_RS04150 0.37 -0.7 951,694 - BPHYT_RS04150 0.68 +0.3 951,838 - BPHYT_RS04150 0.81 +0.9
Or see this region's nucleotide sequence