Experiment: Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02455 and BPHYT_RS02460 are separated by 41 nucleotides BPHYT_RS02460 and BPHYT_RS02465 overlap by 4 nucleotides BPHYT_RS02465 and BPHYT_RS02470 are separated by 27 nucleotides BPHYT_RS02470 and BPHYT_RS02475 are separated by 218 nucleotides
BPHYT_RS02455: BPHYT_RS02455 - taurine ABC transporter substrate-binding protein, at 557,015 to 557,998
_RS02455
BPHYT_RS02460: BPHYT_RS02460 - nitrate ABC transporter ATP-binding protein, at 558,040 to 558,837
_RS02460
BPHYT_RS02465: BPHYT_RS02465 - taurine ABC transporter permease, at 558,834 to 559,703
_RS02465
BPHYT_RS02470: BPHYT_RS02470 - phosphoserine phosphatase, at 559,731 to 560,414
_RS02470
BPHYT_RS02475: BPHYT_RS02475 - membrane protein, at 560,633 to 562,300
_RS02475
Position (kb) 558
559
560 Strain fitness (log2 ratio) -2
-1
0
1
2 at 558.129 kb on - strand, within BPHYT_RS02460 at 558.133 kb on - strand, within BPHYT_RS02460 at 558.242 kb on + strand, within BPHYT_RS02460 at 558.442 kb on + strand, within BPHYT_RS02460 at 558.442 kb on + strand, within BPHYT_RS02460 at 558.442 kb on + strand, within BPHYT_RS02460 at 558.515 kb on + strand, within BPHYT_RS02460 at 558.696 kb on + strand, within BPHYT_RS02460 at 558.700 kb on + strand, within BPHYT_RS02460 at 558.700 kb on + strand, within BPHYT_RS02460 at 558.700 kb on + strand, within BPHYT_RS02460 at 558.701 kb on - strand, within BPHYT_RS02460 at 558.701 kb on - strand, within BPHYT_RS02460 at 558.701 kb on - strand, within BPHYT_RS02460 at 559.028 kb on - strand, within BPHYT_RS02465 at 559.243 kb on - strand, within BPHYT_RS02465 at 559.326 kb on + strand, within BPHYT_RS02465 at 559.326 kb on + strand, within BPHYT_RS02465 at 559.326 kb on + strand, within BPHYT_RS02465 at 559.327 kb on - strand, within BPHYT_RS02465 at 559.327 kb on - strand, within BPHYT_RS02465 at 559.407 kb on + strand, within BPHYT_RS02465 at 559.408 kb on - strand, within BPHYT_RS02465 at 559.702 kb on - strand at 559.971 kb on - strand at 560.230 kb on + strand, within BPHYT_RS02470 at 560.269 kb on + strand, within BPHYT_RS02470 at 560.281 kb on + strand, within BPHYT_RS02470 at 560.282 kb on - strand, within BPHYT_RS02470 at 560.395 kb on - strand at 560.431 kb on + strand at 560.431 kb on + strand at 560.510 kb on + strand at 560.554 kb on + strand at 560.555 kb on - strand at 560.562 kb on + strand at 560.562 kb on + strand at 560.563 kb on - strand at 560.632 kb on + strand at 560.633 kb on - strand at 560.633 kb on - strand at 560.646 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days remove 558,129 - BPHYT_RS02460 0.11 -0.9 558,133 - BPHYT_RS02460 0.12 +1.9 558,242 + BPHYT_RS02460 0.25 +0.1 558,442 + BPHYT_RS02460 0.50 +0.2 558,442 + BPHYT_RS02460 0.50 +0.3 558,442 + BPHYT_RS02460 0.50 +0.3 558,515 + BPHYT_RS02460 0.60 +1.9 558,696 + BPHYT_RS02460 0.82 +0.9 558,700 + BPHYT_RS02460 0.83 -0.3 558,700 + BPHYT_RS02460 0.83 -0.7 558,700 + BPHYT_RS02460 0.83 +0.0 558,701 - BPHYT_RS02460 0.83 +0.3 558,701 - BPHYT_RS02460 0.83 +1.0 558,701 - BPHYT_RS02460 0.83 -0.3 559,028 - BPHYT_RS02465 0.22 -2.1 559,243 - BPHYT_RS02465 0.47 -0.2 559,326 + BPHYT_RS02465 0.57 +0.9 559,326 + BPHYT_RS02465 0.57 +0.1 559,326 + BPHYT_RS02465 0.57 -0.1 559,327 - BPHYT_RS02465 0.57 +0.4 559,327 - BPHYT_RS02465 0.57 +0.3 559,407 + BPHYT_RS02465 0.66 +0.2 559,408 - BPHYT_RS02465 0.66 +0.2 559,702 - +0.4 559,971 - +0.5 560,230 + BPHYT_RS02470 0.73 -0.4 560,269 + BPHYT_RS02470 0.79 +2.1 560,281 + BPHYT_RS02470 0.80 -0.1 560,282 - BPHYT_RS02470 0.81 -0.1 560,395 - +0.5 560,431 + +2.1 560,431 + +0.2 560,510 + -0.3 560,554 + -0.5 560,555 - +0.1 560,562 + -0.8 560,562 + -0.4 560,563 - -0.2 560,632 + +0.2 560,633 - +1.1 560,633 - +0.5 560,646 + +0.7
Or see this region's nucleotide sequence