Experiment: Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00110 and BPHYT_RS00115 are separated by 5 nucleotides BPHYT_RS00115 and BPHYT_RS00120 are separated by 64 nucleotides BPHYT_RS00120 and BPHYT_RS00125 are separated by 334 nucleotides
BPHYT_RS00110: BPHYT_RS00110 - ethanolamine ammonia-lyase small subunit, at 32,823 to 33,620
_RS00110
BPHYT_RS00115: BPHYT_RS00115 - acetaldehyde dehydrogenase, at 33,626 to 34,021
_RS00115
BPHYT_RS00120: BPHYT_RS00120 - aldehyde dehydrogenase, at 34,086 to 35,606
_RS00120
BPHYT_RS00125: BPHYT_RS00125 - AraC family transcriptional regulator, at 35,941 to 36,990
_RS00125
Position (kb) 34
35
36 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 33.393 kb on + strand, within BPHYT_RS00110 at 33.492 kb on + strand, within BPHYT_RS00110 at 33.618 kb on + strand at 33.710 kb on + strand, within BPHYT_RS00115 at 33.813 kb on + strand, within BPHYT_RS00115 at 34.112 kb on + strand at 34.114 kb on + strand at 34.114 kb on + strand at 34.115 kb on - strand at 34.115 kb on - strand at 34.232 kb on - strand at 34.325 kb on - strand, within BPHYT_RS00120 at 34.332 kb on - strand, within BPHYT_RS00120 at 34.456 kb on + strand, within BPHYT_RS00120 at 34.457 kb on - strand, within BPHYT_RS00120 at 34.457 kb on - strand, within BPHYT_RS00120 at 34.544 kb on - strand, within BPHYT_RS00120 at 34.544 kb on - strand, within BPHYT_RS00120 at 34.686 kb on + strand, within BPHYT_RS00120 at 34.686 kb on + strand, within BPHYT_RS00120 at 34.763 kb on - strand, within BPHYT_RS00120 at 34.763 kb on - strand, within BPHYT_RS00120 at 34.763 kb on - strand, within BPHYT_RS00120 at 35.161 kb on + strand, within BPHYT_RS00120 at 35.524 kb on - strand at 35.637 kb on - strand at 35.637 kb on - strand at 35.638 kb on + strand at 35.650 kb on + strand at 35.651 kb on - strand at 35.652 kb on + strand at 35.653 kb on - strand at 35.721 kb on + strand at 35.722 kb on - strand at 35.722 kb on - strand at 35.722 kb on - strand at 35.741 kb on + strand at 35.741 kb on + strand at 35.741 kb on + strand at 35.742 kb on - strand at 36.073 kb on + strand, within BPHYT_RS00125 at 36.254 kb on + strand, within BPHYT_RS00125 at 36.255 kb on - strand, within BPHYT_RS00125 at 36.255 kb on - strand, within BPHYT_RS00125
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days remove 33,393 + BPHYT_RS00110 0.71 -0.2 33,492 + BPHYT_RS00110 0.84 +0.4 33,618 + -0.6 33,710 + BPHYT_RS00115 0.21 +0.4 33,813 + BPHYT_RS00115 0.47 +3.8 34,112 + +1.9 34,114 + +2.0 34,114 + +1.0 34,115 - -0.7 34,115 - -0.3 34,232 - -1.6 34,325 - BPHYT_RS00120 0.16 -0.1 34,332 - BPHYT_RS00120 0.16 -0.8 34,456 + BPHYT_RS00120 0.24 +0.2 34,457 - BPHYT_RS00120 0.24 +1.4 34,457 - BPHYT_RS00120 0.24 -0.7 34,544 - BPHYT_RS00120 0.30 +2.4 34,544 - BPHYT_RS00120 0.30 +0.6 34,686 + BPHYT_RS00120 0.39 +0.1 34,686 + BPHYT_RS00120 0.39 -0.6 34,763 - BPHYT_RS00120 0.45 -0.5 34,763 - BPHYT_RS00120 0.45 +1.4 34,763 - BPHYT_RS00120 0.45 -0.6 35,161 + BPHYT_RS00120 0.71 -1.1 35,524 - -0.6 35,637 - -0.6 35,637 - +0.0 35,638 + +0.4 35,650 + -0.7 35,651 - -0.2 35,652 + -1.2 35,653 - -0.2 35,721 + +1.2 35,722 - -2.9 35,722 - -0.5 35,722 - -1.0 35,741 + -2.2 35,741 + -0.6 35,741 + -1.6 35,742 - -0.2 36,073 + BPHYT_RS00125 0.13 -0.2 36,254 + BPHYT_RS00125 0.30 -0.0 36,255 - BPHYT_RS00125 0.30 -0.7 36,255 - BPHYT_RS00125 0.30 -0.8
Or see this region's nucleotide sequence